| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 31 (0.430) | 23 (0.340) | 21/92 | 1.2 | 40.7% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 38 (0.560) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | ttGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGat < 1:3091453/50‑1 (MQ=255) tGCCATAACGGCGGGCAATTTTTACCACCCGACGCAAGTTACTCTCGat > 1:1764846/1‑49 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 1:2164690‑M2/49‑49 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatca > 1:740617/1‑50 (MQ=255) gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatc < 1:808971/49‑1 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat < 1:3844335‑M2/4‑1 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:4209574‑M2/47‑50 (MQ=255) ccATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcat < 1:4269911/50‑1 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc > 1:4148015‑M2/45‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc > 1:3216006‑M2/45‑50 (MQ=255) tAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcg < 1:3054015/50‑1 (MQ=255) tAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcg < 1:5435378/50‑1 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg < 1:1128710‑M2/8‑1 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc < 1:2224265‑M2/9‑1 (MQ=255) aCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcggc < 1:105946/50‑1 (MQ=255) gaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg > 1:167760‑M2/41‑50 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:4082540‑M2/39‑50 (MQ=255) cggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCggcggc > 1:2429910/1‑49 (MQ=255) cggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCggcggc > 1:3707741/1‑49 (MQ=255) cggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGgcggcg < 1:3691573/50‑1 (MQ=255) cggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGgcggcg < 1:3166887/50‑1 (MQ=255) ggCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCgag < 1:2346187/50‑1 (MQ=255) gCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCga > 1:3910469/1‑48 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:3873008‑M2/34‑50 (MQ=255) tttttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGc > 1:324285/1‑49 (MQ=255) ttttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGa > 1:4594637/1‑50 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:1742197‑M2/29‑49 (MQ=255) ttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACa > 1:4290147/1‑50 (MQ=255) tACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACa < 1:5182664/49‑1 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:1740016‑M2/26‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:1261417‑M2/26‑50 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct > 1:211586‑M2/25‑50 (MQ=255) caccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtctc > 1:3895946/1‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:3204020‑M2/23‑49 (MQ=255) accaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTcc < 1:1611503/50‑1 (MQ=255) ccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCa < 1:355848/50‑1 (MQ=255) caGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCAc < 1:4570654/50‑1 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:4064180‑M2/20‑50 (MQ=255) aGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:4252967/1‑50 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:3743780‑M2/19‑49 (MQ=255) aCGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCa < 1:4770813/50‑1 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:3204152‑M2/17‑50 (MQ=255) cGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:2952118/1‑50 (MQ=255) gCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:419694/50‑1 (MQ=255) gCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 1:5492577/1‑50 (MQ=255) gCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:3477376/50‑1 (MQ=255) gCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:3467734/50‑1 (MQ=255) cAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg > 1:3648471/1‑50 (MQ=255) cAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg > 1:2431201/1‑50 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 1:675099‑M2/37‑1 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 1:4982883‑M2/14‑50 (MQ=255) aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 1:883540/1‑50 (MQ=255) aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 1:755424/50‑1 (MQ=255) aGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:2263764/1‑50 (MQ=255) aGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg < 1:1766229/50‑1 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc < 1:1008855‑M2/39‑1 (MQ=255) ttACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGcgcg < 1:1465064/50‑1 (MQ=255) aCTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:5328513/1‑50 (MQ=255) gcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg > 1:1587528‑M2/8‑50 (MQ=255) ctctCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg < 1:1947689/50‑1 (MQ=255) accgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg < 1:49869‑M2/45‑1 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 1:2415825‑M2/4‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa < 1:497930‑M2/48‑1 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaa < 1:43522‑M2/49‑1 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa > 1:2355170‑M2/2‑49 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa > 1:1096114‑M2/2‑49 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa > 1:306708/1‑50 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |