| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 31 (0.430) | 23 (0.340) | 21/92 | 1.2 | 40.7% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 38 (0.560) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 | aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:3548705‑M1/1‑50 (MQ=255)aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:4390599‑M1/1‑50 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt > 1:2164690‑M1/1‑48 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAca < 1:3488393/50‑1 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:1240201‑M1/1‑48 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:4209574‑M1/1‑46 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat < 1:3844335‑M1/50‑5 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc > 1:3216006‑M1/1‑44 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc > 1:4148015‑M1/1‑44 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagcca < 1:2725373/50‑1 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg < 1:1128710‑M1/50‑9 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagccagc > 1:2170929/1‑50 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagccagc > 1:2920784/1‑50 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc < 1:2224265‑M1/50‑10 (MQ=255) gACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg > 1:167760‑M1/1‑40 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:4082540‑M1/1‑38 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCAccc > 1:2503811/1‑50 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCt > 1:3399/1‑50 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCt > 1:5032512/1‑50 (MQ=255) tCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGt > 1:1035767/1‑50 (MQ=255) tCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGt > 1:2690847/1‑50 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:3873008‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGt < 1:2552070/49‑1 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGttt > 1:3596120/1‑50 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGttt > 1:3187581/1‑50 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg < 1:3025770/50‑1 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:1742197‑M1/1‑28 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtag > 1:4590766/1‑50 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtag > 1:3227300/1‑50 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgta < 1:741449/49‑1 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagt > 1:1242653/1‑49 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagt < 1:1660968/49‑1 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:1261417‑M1/1‑25 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:1740016‑M1/1‑25 (MQ=255) ttCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct > 1:211586‑M1/1‑24 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:3204020‑M1/1‑22 (MQ=255) gtcgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGaa < 1:4613901/50‑1 (MQ=255) gtcgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGa < 1:1883517/49‑1 (MQ=255) gtcgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGa > 1:4054291/1‑49 (MQ=255) tcgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGaaa > 1:3573860/1‑50 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:4064180‑M1/1‑19 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:3743780‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAAc < 1:1170475/49‑1 (MQ=255) ttACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTc > 1:2402089/1‑50 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:3204152‑M1/1‑16 (MQ=255) ccAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTccac > 1:2075334/1‑50 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc > 1:4982883‑M1/1‑13 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc < 1:675099‑M1/50‑38 (MQ=255) cAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTccac > 1:5564329/1‑49 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc < 1:1008855‑M1/50‑40 (MQ=255) aCAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACt < 1:2540477/50‑1 (MQ=255) aGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTc < 1:5074961/50‑1 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg > 1:1587528‑M1/1‑7 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg < 1:49869‑M1/50‑46 (MQ=255) ccGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCgg > 1:123637/1‑49 (MQ=255) cGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgc > 1:2415825‑M1/1‑3 (MQ=255) cGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCgg > 1:3778754/1‑48 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa < 1:497930‑M1/50‑49 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaa < 1:43522‑M1/50‑50 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 1:1096114‑M1/1‑1 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 1:2355170‑M1/1‑1 (MQ=255) aCAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAgg < 1:1611072/50‑1 (MQ=255) | ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |