| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 113 [0] | [0] 113 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 108 (1.550) | 63/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
Only 100 of 116 total aligned reads displayed.
GCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2994941‑2994991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAA > NC_000913/2998869‑2998917 GCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC > 1:1958915/1‑50GCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC < 1:3127529/50‑1 CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC < 1:5527876/50‑1 CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC > 1:2953669/1‑49 TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCA > 1:3529379/1‑50 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACT > 1:1158499/1‑50 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCAC < 1:5264946/49‑1 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCA < 1:4989534/48‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTA < 1:5209270/50‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTA < 1:4168599/50‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTA > 1:178097/1‑50 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTA > 1:4643527/1‑50 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTT < 1:4682984/49‑1 ATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTAT < 1:5231445/50‑1 ATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTAT > 1:2448218/1‑50 TTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATT < 1:2047482/50‑1 TTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATT > 1:3165513/1‑49 TGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTT > 1:119597/1‑49 TGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTT < 1:4977127/49‑1 GTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAA > 1:3178037/1‑50 GTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTA < 1:4699282/49‑1 GTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTA < 1:613870/49‑1 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAAC < 1:2809909/50‑1 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAA < 1:2503441/49‑1 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAA < 1:1757875/49‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAAC < 1:3823261/50‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAAC < 1:529917/50‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAAC < 1:662138/50‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAAC > 1:1130678/1‑50 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAA < 1:4117598/49‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAA < 1:865902/49‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAA < 1:5084331/49‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAA < 1:2658715/49‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAA < 1:1948268/49‑1 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACT < 1:2655186/50‑1 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACT < 1:4359213/50‑1 ACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACT > 1:3131889/1‑50 CTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTT < 1:1224879/50‑1 CTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTT < 1:491991/50‑1 CTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTT > 1:4412350/1‑50 TCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTT > 1:5412561/1‑49 CCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG > 1:3213957/1‑49 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA < 1:1257626/49‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA < 1:4267644/49‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG < 1:5045522/48‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG < 1:3114036/48‑1 CGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTG < 1:859806/48‑1 GCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAA < 1:1190549/50‑1 GCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAA < 1:3717493/50‑1 CTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA > 1:2695628/1‑50 TATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA > 1:3592052/1‑49 TATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA > 1:4751304/1‑49 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAA < 1:2908769/50‑1 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAA < 1:4509179/50‑1 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAA < 1:2992359/50‑1 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATA < 1:3215369/49‑1 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAAT > 1:420422/1‑48 TAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAAT < 1:2585998/48‑1 AGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAG > 1:4475477/1‑50 TTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTG > 1:4600434/1‑50 TTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTG > 1:2059038/1‑50 TTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGT > 1:1360066/1‑50 TCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTT > 1:1454367/1‑50 TCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGT < 1:2399286/49‑1 CTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTT > 1:410155/1‑50 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA < 1:1464743/49‑1 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA < 1:3187624/49‑1 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA < 1:5484321/49‑1 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA < 1:2975398/49‑1 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA < 1:1769206/49‑1 AGATCTTTATAGGCCACTTATTTAACAACTTGAAAATAAGGTGTTTTAC < 1:4382454/49‑1 AGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACC > 1:791245/1‑50 AGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACC > 1:3590899/1‑50 AGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTAC < 1:380439/49‑1 GATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCT < 1:4347175/50‑1 GATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCT < 1:1642850/50‑1 GATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCT > 1:4746307/1‑50 GATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCT < 1:1896908/50‑1 ATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG > 1:626536/1‑50 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTG > 1:2533041/1‑50 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTG > 1:2619419/1‑50 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTG > 1:4070639/1‑50 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTT < 1:191039/49‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTT < 1:3604015/49‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTT < 1:1584818/49‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGG < 1:1162851/46‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTT < 1:1734286/40‑1 ATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGT > 1:1387733/1‑50 ATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTG < 1:263198/49‑1 TAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTT < 1:4185268/50‑1 TAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGT > 1:1441955/1‑49 TAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGT > 1:3178094/1‑49 AGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTA > 1:5384608/1‑50 GCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAC < 1:4494270/50‑1 GCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTA < 1:3983357/49‑1 CCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACA < 1:314277/50‑1 CCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACA < 1:3218554/50‑1 CCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA < 1:4615103/50‑1 CCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACA > 1:3528901/1‑49 CACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > 1:1500361/1‑49 GCTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2994941‑2994991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAA > NC_000913/2998869‑2998917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |