| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 30 (0.410) | 28 (0.390) | 23/98 | 1.1 | 49.6% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 27 (0.370) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593250‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > NC_000913/3593309‑3593357 ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAC < 1:2217418/50‑1 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:5404427/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:2447823/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:2537747/1‑50 CCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCG > 1:2702752/1‑50 TGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG > 1:3177903/1‑50 GGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGC > 1:1740940/1‑50 GTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG < 1:1809663/48‑1 CACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAA > 1:3725427/1‑50 ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 1:1684056/1‑50 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC < 1:1395923/50‑1 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC > 1:3413245/1‑50 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT < 1:2462804/50‑1 ATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGT > 1:1583548/1‑50 TCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTG < 1:3219265/50‑1 CGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:2090133/1‑50 CGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:4355630/1‑50 CCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACA < 1:4440703/50‑1 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT < 1:3952354/50‑1 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT > 1:682507/1‑50 ATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCT > 1:72730/1‑50 TAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTC > 1:3952148/1‑50 CGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGAT > 1:3915632/1‑50 CGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGAT > 1:129540/1‑50 GAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT < 1:3707557/50‑1 GAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT < 1:4261602/50‑1 CACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGAT < 1:1744475/50‑1 ACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > 1:1444501/1‑50 ACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593250‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATA > NC_000913/3593309‑3593357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |