| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 30 (0.410) | 28 (0.390) | 23/98 | 1.1 | 49.6% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 27 (0.370) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATAT > NC_000913/3593260‑3593358 | cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 1:1358872/1‑50 (MQ=255)cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 1:304850/1‑50 (MQ=255)acaattcgcccgctggtggcacgcggatcgccgcataacgtgccgagcac < 1:2217418‑M2/1‑1 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc < 1:402088/50‑1 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccc < 1:5141282/50‑1 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccc > 1:433028/1‑50 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcccc > 1:5187769/1‑50 (MQ=255) ggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccg > 1:2768977/1‑50 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcccc < 1:3831095/48‑1 (MQ=255) gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccc > 1:5404427‑M2/43‑50 (MQ=255) gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccc > 1:2537747‑M2/43‑50 (MQ=255) gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccc > 1:2447823‑M2/43‑50 (MQ=255) gCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgcccc > 1:1164307/1‑50 (MQ=255) ccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccccg > 1:2702752‑M2/41‑50 (MQ=255) aCGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGt > 1:1290533/1‑50 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc > 1:4913412/1‑50 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc > 1:3002905/1‑50 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc < 1:2396154/50‑1 (MQ=255) tggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTcg > 1:3177903‑M2/37‑50 (MQ=255) cgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcg < 1:2354910/50‑1 (MQ=255) ggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTcgc > 1:1740940‑M2/36‑50 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc > 1:2533881/1‑50 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc > 1:2584030/1‑50 (MQ=255) gtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTcg < 1:1809663‑M2/14‑1 (MQ=255) gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa > 1:1648837/1‑50 (MQ=255) cacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCaa > 1:3725427‑M2/31‑50 (MQ=255) acgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAAt > 1:1684056‑M2/30‑50 (MQ=255) cgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:1191620/1‑49 (MQ=255) cgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATc < 1:610121/50‑1 (MQ=255) ggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGc < 1:1395923‑M2/25‑1 (MQ=255) ggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGc > 1:3413245‑M2/26‑50 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg < 1:2532827/50‑1 (MQ=255) atcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGt > 1:1583548‑M2/24‑50 (MQ=255) atcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGt < 1:2462804‑M2/27‑1 (MQ=255) tcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTg < 1:3219265‑M2/28‑1 (MQ=255) cgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:4355630‑M2/22‑50 (MQ=255) cgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:2090133‑M2/22‑50 (MQ=255) cGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:4756509/1‑50 (MQ=255) gTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:3382556/1‑49 (MQ=255) ccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACa < 1:4440703‑M2/31‑1 (MQ=255) gCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa > 1:113584/1‑50 (MQ=255) gCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa > 1:1623614/1‑50 (MQ=255) gcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAt < 1:3952354‑M2/33‑1 (MQ=255) gcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAt > 1:682507‑M2/18‑50 (MQ=255) gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct > 1:5130974/1‑50 (MQ=255) ataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct > 1:72730‑M2/16‑50 (MQ=255) taacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc > 1:3952148‑M2/15‑50 (MQ=255) aaGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGcc > 1:1331213/1‑50 (MQ=255) aaGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGcc > 1:3317151/1‑50 (MQ=255) cgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgat > 1:129540‑M2/7‑50 (MQ=255) cgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgat > 1:3915632‑M2/7‑50 (MQ=255) gagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgatt < 1:4261602‑M2/45‑1 (MQ=255) gagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgatt < 1:3707557‑M2/45‑1 (MQ=255) caCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgattgat < 1:1744475‑M2/48‑1 (MQ=255) aCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGata > 1:1444501‑M2/2‑50 (MQ=255) ccccgccccgTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGatat > 1:2483872/1‑50 (MQ=255) | CGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATAT > NC_000913/3593260‑3593358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |