| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 30 (0.410) | 28 (0.390) | 23/98 | 1.1 | 49.6% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 27 (0.370) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
CACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC > NC_000913/3593249‑3593347 | cacaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCa < 1:2723995/50‑1 (MQ=255)cacaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCa > 1:2863467/1‑50 (MQ=255)cacaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCa < 1:4385612/50‑1 (MQ=255) acaATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAc < 1:2217418‑M1/50‑2 (MQ=255) aTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggt > 1:3411640/1‑50 (MQ=255) cGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtgg < 1:1518908/49‑1 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc > 1:2537747‑M1/1‑42 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc > 1:2447823‑M1/1‑42 (MQ=255) gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc > 1:5404427‑M1/1‑42 (MQ=255) cccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGttt > 1:685842/1‑50 (MQ=255) ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccg > 1:2702752‑M1/1‑40 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 1:1358872/1‑50 (MQ=255) cGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTc > 1:304850/1‑50 (MQ=255) gCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcc < 1:402088/50‑1 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccc > 1:433028/1‑50 (MQ=255) cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccc < 1:5141282/50‑1 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcg > 1:3177903‑M1/1‑36 (MQ=255) tggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcccc > 1:5187769/1‑50 (MQ=255) ggtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgc > 1:1740940‑M1/1‑35 (MQ=255) ggtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccg > 1:2768977/1‑50 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcg < 1:1809663‑M1/48‑15 (MQ=255) gtggCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTcccc < 1:3831095/48‑1 (MQ=255) gCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgcccc > 1:1164307/1‑50 (MQ=255) cACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaa > 1:3725427‑M1/1‑30 (MQ=255) aCGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaat > 1:1684056‑M1/1‑29 (MQ=255) aCGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGt > 1:1290533/1‑50 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc > 1:4913412/1‑50 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc < 1:2396154/50‑1 (MQ=255) gcgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTc > 1:3002905/1‑50 (MQ=255) cgGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcg < 1:2354910/50‑1 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc < 1:1395923‑M1/50‑26 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc > 1:3413245‑M1/1‑25 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc > 1:2533881/1‑50 (MQ=255) ggATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTcgc > 1:2584030/1‑50 (MQ=255) aTCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgt < 1:2462804‑M1/50‑28 (MQ=255) aTCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgt > 1:1583548‑M1/1‑23 (MQ=255) tCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtg < 1:3219265‑M1/50‑29 (MQ=255) cgccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtga > 1:2090133‑M1/1‑21 (MQ=255) cgccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtga > 1:4355630‑M1/1‑21 (MQ=255) gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa > 1:1648837/1‑50 (MQ=255) ccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgaca < 1:4440703‑M1/50‑32 (MQ=255) cgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAAt > 1:1191620/1‑49 (MQ=255) cgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATc < 1:610121/50‑1 (MQ=255) gcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaat > 1:682507‑M1/1‑17 (MQ=255) gcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaat < 1:3952354‑M1/50‑34 (MQ=255) aTAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatct > 1:72730‑M1/1‑15 (MQ=255) tAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctc > 1:3952148‑M1/1‑14 (MQ=255) tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg < 1:2532827/50‑1 (MQ=255) cGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:4756509/1‑50 (MQ=255) gTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGa > 1:3382556/1‑49 (MQ=255) gCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa > 1:1623614/1‑50 (MQ=255) gCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa > 1:113584/1‑50 (MQ=255) cGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgat > 1:3915632‑M1/1‑6 (MQ=255) cGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgat > 1:129540‑M1/1‑6 (MQ=255) gAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgatt < 1:4261602‑M1/50‑46 (MQ=255) gAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgatt < 1:3707557‑M1/50‑46 (MQ=255) gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct > 1:5130974/1‑50 (MQ=255) cAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgattgat < 1:1744475‑M1/50‑49 (MQ=255) accccgccccgttcgcgccaatcagcgtgacaatctcgccctgattgata > 1:1444501‑M1/1‑1 (MQ=255) aaGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGcc > 1:1331213/1‑50 (MQ=255) aaGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGcc > 1:3317151/1‑50 (MQ=255) | CACAATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCC > NC_000913/3593249‑3593347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |