| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 98 [0] | [0] 93 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 92 (1.290) | 64/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA < 1:662831/50‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:383183/1‑49TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:519003/49‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:5253395/49‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:2513236/49‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:73306/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:4640058/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:5281214/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG > 1:2715445/1‑50 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:4493681/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:4896198/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:3867838/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:2848043/49‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:3816309/1‑50 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:5249405/1‑50 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCG < 1:2760882/50‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCG < 1:4253596/50‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:1227674/1‑49 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:4874817/1‑48 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:5241273/1‑47 TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:1272571/1‑49 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:1801583/1‑50 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:80366/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:4201473/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:2287987/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA < 1:5095474/49‑1 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:1582132/1‑49 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:5087554/1‑49 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:5506582/50‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT > 1:306801/1‑49 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:4387632/49‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:1088112/50‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:29382/1‑48 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG > 1:4029650/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT < 1:2373224/50‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:3811707/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:1944000/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT < 1:2832820/50‑1 TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:4327884/1‑50 GAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG > 1:3026869/1‑50 agTGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT < 1:4368821/46‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC < 1:2077522/50‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC < 1:4265430/50‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG < 1:2744706/49‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG < 1:2660867/49‑1 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC < 1:1325509/50‑1 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:567146/1‑49 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:1652255/1‑49 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:1789560/1‑49 TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA < 1:1824728/50‑1 GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT > 1:3983861/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:5504405/50‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:2429413/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:1699361/49‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:235182/49‑1 TAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:2922950/1‑49 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC < 1:2970697/49‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG < 1:5095851/50‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:4640778/49‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC > 1:1210361/1‑50 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:5510693/50‑1 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT < 1:5190332/50‑1 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT < 1:1496716/50‑1 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC > 1:5221912/1‑50 CATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC > 1:1915451/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG < 1:3683175/50‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:1993163/49‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC < 1:1539794/48‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG < 1:4728365/50‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG < 1:2723582/50‑1 TCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG > 1:1147534/1‑50 CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG > 1:1918863/1‑49 CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG < 1:278105/49‑1 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:1528260/1‑49 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:4076402/1‑49 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG > 1:545997/1‑50 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG > 1:3156118/1‑50 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA < 1:2433775/49‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGA < 1:3979067/48‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG < 1:3082904/47‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG < 1:5344533/47‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT > 1:3872346/1‑50 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT < 1:5242085/50‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT > 1:2969478/1‑50 TGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTG > 1:2031383/1‑50 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:4344966/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:2317476/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:5078669/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:297907/49‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:4237279/49‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG < 1:2816957/50‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG < 1:3309905/50‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG > 1:2220216/1‑50 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG > 1:890692/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG > 1:3769794/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:3541463/49‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:4394007/49‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:3859861/50‑1 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |