Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,555,491 Δ41,523 bp [yjiC]–lgoD 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4555491 4597013 41523 98 [0] [0] 93 [yjiC]–lgoD [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 45554900 (0.000)92 (1.290) 64/96 0.0 100% coding (831/831 nt) yjiC uncharacterized protein YjiC
?NC_000913 4597014 = 0 (0.000)intergenic (+2/+136) lgoD/opgB L‑galactonate oxidoreductase/phosphoglycerol transferase I

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG  >  NC_000913/4555442‑4555539
                                                |                                                 
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa                                                  <  1:662831‑M1/50‑2 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:383183‑M1/1‑49 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   <  1:519003‑M1/49‑1 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   <  1:5253395‑M1/49‑1 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   <  1:2513236‑M1/49‑1 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   <  1:73306‑M1/49‑1 (MQ=255)
  tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag                                                >  1:4640058‑M1/1‑47 (MQ=255)
  tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa                                                 <  1:5281214‑M1/49‑3 (MQ=255)
   aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg                                               >  1:2715445‑M1/1‑46 (MQ=255)
   aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag                                                <  1:4493681‑M1/49‑4 (MQ=255)
   aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag                                                <  1:4896198‑M1/49‑4 (MQ=255)
   aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag                                                <  1:3867838‑M1/49‑4 (MQ=255)
   aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag                                                <  1:2848043‑M1/49‑4 (MQ=255)
    gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc                                              >  1:3816309‑M1/1‑45 (MQ=255)
    gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc                                              >  1:5249405‑M1/1‑45 (MQ=255)
     cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcg                                             <  1:2760882‑M1/50‑7 (MQ=255)
     cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcg                                             <  1:4253596‑M1/50‑7 (MQ=255)
     cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc                                              >  1:1227674‑M1/1‑44 (MQ=255)
      tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc                                              >  1:4874817‑M1/1‑43 (MQ=255)
       aTCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc                                              >  1:5241273‑M1/1‑42 (MQ=255)
          tGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat                                         >  1:1272571‑M1/1‑39 (MQ=255)
           gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta                                       >  1:1801583‑M1/1‑38 (MQ=255)
           gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta                                       >  1:80366‑M1/1‑38 (MQ=255)
            tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      >  1:4201473‑M1/1‑37 (MQ=255)
            tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      >  1:2287987‑M1/1‑37 (MQ=255)
            tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta                                       <  1:5095474‑M1/49‑13 (MQ=255)
             ataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      >  1:1582132‑M1/1‑36 (MQ=255)
             ataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      >  1:5087554‑M1/1‑36 (MQ=255)
              taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta                                    <  1:5506582‑M1/50‑16 (MQ=255)
              taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt                                     >  1:306801‑M1/1‑35 (MQ=255)
              taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt                                     <  1:4387632‑M1/49‑15 (MQ=255)
                aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa                                  <  1:1088112‑M1/50‑18 (MQ=255)
                aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta                                    >  1:29382‑M1/1‑33 (MQ=255)
                 ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag                                 >  1:4029650‑M1/1‑32 (MQ=255)
                  cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt                                <  1:2373224‑M1/50‑20 (MQ=255)
                  cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt                                >  1:3811707‑M1/1‑31 (MQ=255)
                  cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt                                >  1:1944000‑M1/1‑31 (MQ=255)
                  cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt                                <  1:2832820‑M1/50‑20 (MQ=255)
                   tGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt                               >  1:4327884‑M1/1‑30 (MQ=255)
                    gAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg                              >  1:3026869‑M1/1‑29 (MQ=255)
                     agtgtTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt                               <  1:4368821‑M1/46‑21 (MQ=255)
                     aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             <  1:2077522‑M1/50‑23 (MQ=255)
                     aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             <  1:4265430‑M1/50‑23 (MQ=255)
                     aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg                              <  1:2744706‑M1/49‑22 (MQ=255)
                     aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg                              <  1:2660867‑M1/49‑22 (MQ=255)
                      aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcc                            <  1:1325509‑M1/50‑24 (MQ=255)
                      aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             >  1:567146‑M1/1‑27 (MQ=255)
                      aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             >  1:1652255‑M1/1‑27 (MQ=255)
                      aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             >  1:1789560‑M1/1‑27 (MQ=255)
                       tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca                           <  1:1824728‑M1/50‑25 (MQ=255)
                        gTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat                          >  1:3983861‑M1/1‑25 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         <  1:5504405‑M1/50‑27 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         >  1:2429413‑M1/1‑24 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat                          <  1:1699361‑M1/49‑26 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat                          <  1:235182‑M1/49‑26 (MQ=255)
                          tAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         >  1:2922950‑M1/1‑23 (MQ=255)
                           aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgc                        <  1:2970697‑M1/49‑28 (MQ=255)
                            gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcag                      <  1:5095851‑M1/50‑30 (MQ=255)
                            gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca                       <  1:4640778‑M1/49‑29 (MQ=255)
                             tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc                     >  1:1210361‑M1/1‑20 (MQ=255)
                             tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc                     <  1:5510693‑M1/50‑31 (MQ=255)
                               cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt                   <  1:5190332‑M1/50‑33 (MQ=255)
                               cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt                   <  1:1496716‑M1/50‑33 (MQ=255)
                                tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc                  >  1:5221912‑M1/1‑17 (MQ=255)
                                 cATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc                 >  1:1915451‑M1/1‑16 (MQ=255)
                                  aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg                <  1:3683175‑M1/50‑36 (MQ=255)
                                  aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc                 <  1:1993163‑M1/49‑35 (MQ=255)
                                  aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc                  <  1:1539794‑M1/48‑34 (MQ=255)
                                   ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg               <  1:4728365‑M1/50‑37 (MQ=255)
                                   ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg               <  1:2723582‑M1/50‑37 (MQ=255)
                                    tcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg              >  1:1147534‑M1/1‑13 (MQ=255)
                                     cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg              >  1:1918863‑M1/1‑12 (MQ=255)
                                     cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg              <  1:278105‑M1/49‑38 (MQ=255)
                                      ttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg             >  1:1528260‑M1/1‑11 (MQ=255)
                                      ttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg             >  1:4076402‑M1/1‑11 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaag          >  1:545997‑M1/1‑9 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaag          >  1:3156118‑M1/1‑9 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa           <  1:2433775‑M1/49‑41 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggga            <  1:3979067‑M1/48‑40 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg             <  1:3082904‑M1/47‑39 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg             <  1:5344533‑M1/47‑39 (MQ=255)
                                         cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt         >  1:3872346‑M1/1‑8 (MQ=255)
                                         cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt         <  1:5242085‑M1/50‑43 (MQ=255)
                                         cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt         >  1:2969478‑M1/1‑8 (MQ=255)
                                          tGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtg        >  1:2031383‑M1/1‑7 (MQ=255)
                                            gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt      <  1:4344966‑M1/50‑46 (MQ=255)
                                            gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt      <  1:2317476‑M1/50‑46 (MQ=255)
                                            gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt      <  1:5078669‑M1/50‑46 (MQ=255)
                                            gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt       <  1:297907‑M1/49‑45 (MQ=255)
                                            gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt       <  1:4237279‑M1/49‑45 (MQ=255)
                                             tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg     <  1:2816957‑M1/50‑47 (MQ=255)
                                             tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg     <  1:3309905‑M1/50‑47 (MQ=255)
                                             tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg     >  1:2220216‑M1/1‑4 (MQ=255)
                                             tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg     >  1:890692‑M1/1‑4 (MQ=255)
                                               gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg   >  1:3769794‑M1/1‑2 (MQ=255)
                                               gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg    <  1:3541463‑M1/49‑48 (MQ=255)
                                               gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg    <  1:4394007‑M1/49‑48 (MQ=255)
                                                taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc  <  1:3859861‑M1/50‑50 (MQ=255)
                                                |                                                 
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG  >  NC_000913/4555442‑4555539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.