| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 98 [0] | [0] 93 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 92 (1.290) | 64/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4596965‑4597062 | tttagctatctgtataacctgaatgttagtactcattcttcctggtagta < 1:662831‑M2/1‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtaa < 1:5281214‑M2/2‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg > 1:4640058‑M2/48‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:2715445‑M2/47‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:2848043‑M2/3‑1 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:4896198‑M2/3‑1 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:4493681‑M2/3‑1 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:3867838‑M2/3‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:3816309‑M2/46‑50 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:5249405‑M2/46‑50 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:1227674‑M2/45‑49 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGCg < 1:2760882‑M2/6‑1 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGCg < 1:4253596‑M2/6‑1 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:4874817‑M2/44‑48 (MQ=255) atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:5241273‑M2/43‑47 (MQ=255) tgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:1272571‑M2/40‑49 (MQ=255) gtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta > 1:1801583‑M2/39‑50 (MQ=255) gtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta > 1:80366‑M2/39‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:4201473‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:2287987‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta < 1:5095474‑M2/12‑1 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:1582132‑M2/37‑49 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:5087554‑M2/37‑49 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt < 1:4387632‑M2/14‑1 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt > 1:306801‑M2/36‑49 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta < 1:5506582‑M2/15‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 1:29382‑M2/34‑48 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa < 1:1088112‑M2/17‑1 (MQ=255) cctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg > 1:4029650‑M2/33‑50 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt < 1:2373224‑M2/19‑1 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt > 1:3811707‑M2/32‑50 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt > 1:1944000‑M2/32‑50 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt < 1:2832820‑M2/19‑1 (MQ=255) tgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt > 1:4327884‑M2/31‑50 (MQ=255) gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg > 1:3026869‑M2/30‑50 (MQ=255) agtgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 1:4368821‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 1:2660867‑M2/21‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 1:2744706‑M2/21‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc < 1:2077522‑M2/22‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc < 1:4265430‑M2/22‑1 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGcc < 1:1325509‑M2/23‑1 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:1652255‑M2/28‑49 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:567146‑M2/28‑49 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:1789560‑M2/28‑49 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:1824728‑M2/24‑1 (MQ=255) gttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt > 1:3983861‑M2/26‑50 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:1699361‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:235182‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg < 1:5504405‑M2/26‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:2429413‑M2/25‑50 (MQ=255) tagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:2922950‑M2/24‑49 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGc < 1:2970697‑M2/27‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:4640778‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg < 1:5095851‑M2/29‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc < 1:5510693‑M2/30‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc > 1:1210361‑M2/21‑50 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt < 1:1496716‑M2/32‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt < 1:5190332‑M2/32‑1 (MQ=255) tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc > 1:5221912‑M2/18‑50 (MQ=255) cattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc > 1:1915451‑M2/17‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:1993163‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc < 1:1539794‑M2/33‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg < 1:3683175‑M2/35‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg < 1:2723582‑M2/36‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg < 1:4728365‑M2/36‑1 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:1147534‑M2/14‑50 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:1918863‑M2/13‑49 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 1:278105‑M2/37‑1 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:4076402‑M2/12‑49 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:1528260‑M2/12‑49 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg < 1:5344533‑M2/38‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg < 1:3082904‑M2/38‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:2433775‑M2/40‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGa < 1:3979067‑M2/39‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg > 1:545997‑M2/10‑50 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg > 1:3156118‑M2/10‑50 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt > 1:2969478‑M2/9‑50 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:5242085‑M2/42‑1 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt > 1:3872346‑M2/9‑50 (MQ=255) tggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg > 1:2031383‑M2/8‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 1:297907‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 1:4237279‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:5078669‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:2317476‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:4344966‑M2/45‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg > 1:890692‑M2/5‑50 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg < 1:3309905‑M2/46‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg < 1:2816957‑M2/46‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg > 1:2220216‑M2/5‑50 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg > 1:3769794‑M2/3‑50 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:4394007‑M2/47‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:3541463‑M2/47‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:3859861‑M2/49‑1 (MQ=255) | GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4596965‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |