BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	167,484	Δ5,964 bp		[fhuA]–fhuB	[fhuA], fhuC, fhuD, fhuB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	167484	173447	5964	113 [0]	[0] 113	[fhuA]–fhuB	[fhuA],fhuC,fhuD,fhuB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 167483	0 (0.000)	110 (1.510)	69/98	0.0	100%	intergenic (+219/‑1)	mrcB/fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor
*	?	NC_000913	173448 =	0 (0.000)	110 (1.510)	69/98	0.0	100%	intergenic (+4/+154)	fhuB/hemL	iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase

Only 100 of 113 total aligned reads displayed.

ATAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATCG  >  NC_000913/167434‑167532

ataatCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCa                                                   >  1:1220510/1‑50 (MQ=255)

ataatCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCa                                                   >  1:2692847/1‑50 (MQ=255)

ataatCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCa                                                   <  1:2066923/50‑1 (MQ=255)

 tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                  <  1:5273522‑M1/50‑2 (MQ=255)

 tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                  <  1:3011230‑M1/50‑2 (MQ=255)

 tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                  >  1:4372660‑M1/1‑49 (MQ=255)

  aaTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt                                                 >  1:5170171‑M1/1‑48 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                                <  1:219308‑M1/50‑4 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt                                                 <  1:4132391‑M1/49‑3 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt                                                 <  1:2024161‑M1/49‑3 (MQ=255)

    tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                                >  1:5500322‑M1/1‑46 (MQ=255)

     cATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                              >  1:1573091‑M1/1‑45 (MQ=255)

      aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccat                                             <  1:4229602‑M1/50‑7 (MQ=255)

      aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                              <  1:3688135‑M1/49‑6 (MQ=255)

       ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata                                            <  1:4144104‑M1/50‑8 (MQ=255)

         ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat                                           <  1:1255410‑M1/49‑9 (MQ=255)

         ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat                                           <  1:1473173‑M1/49‑9 (MQ=255)

          tcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataa                                         >  1:3481580‑M1/1‑40 (MQ=255)

           cGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac                                        >  1:4324047‑M1/1‑39 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacg                                       <  1:1604640‑M1/50‑13 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac                                        <  1:2583365‑M1/49‑12 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataa                                         <  1:3484710‑M1/48‑11 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataa                                         <  1:3562800‑M1/48‑11 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataa                                         <  1:862453‑M1/48‑11 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataa                                         <  1:2132791‑M1/48‑11 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata                                          <  1:75249‑M1/47‑10 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata                                          <  1:2479374‑M1/47‑10 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                      <  1:4393878‑M1/50‑14 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                      <  1:4843874‑M1/50‑14 (MQ=255)

               tACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggc                                     <  1:3400158‑M1/49‑15 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccc                                   >  1:2054650‑M1/1‑34 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggcc                                    <  1:4458556‑M1/49‑16 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggcc                                    <  1:3369551‑M1/49‑16 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccca                                  <  1:3070769‑M1/50‑18 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccc                                   <  1:5174857‑M1/49‑17 (MQ=255)

                  gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 <  1:1276466‑M1/50‑19 (MQ=255)

                  gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 <  1:1386422‑M1/50‑19 (MQ=255)

                  gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                 >  1:5360421‑M1/1‑32 (MQ=255)

                   ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgt                                <  1:5232726‑M1/50‑20 (MQ=255)

                    tATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                               >  1:3787089‑M1/1‑30 (MQ=255)

                    tATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                               >  1:5117182‑M1/1‑30 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                               <  1:2431827‑M1/49‑21 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                               <  1:3523582‑M1/49‑21 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacg                             <  1:4874575‑M1/50‑23 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                              <  1:267558‑M1/49‑22 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                              <  1:5175177‑M1/49‑22 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                              <  1:5130667‑M1/49‑22 (MQ=255)

                       cATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc                            >  1:4890039‑M1/1‑27 (MQ=255)

                       cATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc                            >  1:843490‑M1/1‑27 (MQ=255)

                       cATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc                            >  1:2802477‑M1/1‑27 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc                           >  1:5506133‑M1/1‑26 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc                            <  1:2833261‑M1/49‑24 (MQ=255)

                         ttCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcct                          <  1:3622549‑M1/50‑26 (MQ=255)

                         ttCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcct                          <  1:164817‑M1/50‑26 (MQ=255)

                         ttCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcct                          >  1:5351621‑M1/1‑25 (MQ=255)

                          tCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg                         >  1:1127502‑M1/1‑24 (MQ=255)

                          tCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg                         >  1:453691‑M1/1‑24 (MQ=255)

                          tCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg                         >  1:1598301‑M1/1‑24 (MQ=255)

                          tCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg                         >  1:2035694‑M1/1‑24 (MQ=255)

                          tCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg                         >  1:2286345‑M1/1‑24 (MQ=255)

                           cACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg                         >  1:5188277‑M1/1‑23 (MQ=255)

                            aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga                       >  1:2099717‑M1/1‑22 (MQ=255)

                            aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgg                        <  1:1894734‑M1/49‑28 (MQ=255)

                             cTTTACATCAGAGATATACCAttccatataacggccttgtacgcctggac                      <  1:2691549‑M1/50‑30 (MQ=255)

                             cTTTACATCAGAGATATACCAttccatataacggccctgtacgcctggac                      >  1:931826‑M1/1‑21 (MQ=255)

                              tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                     >  1:647719‑M1/1‑20 (MQ=255)

                              tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                     >  1:4363084‑M1/1‑20 (MQ=255)

                              tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                     >  1:845343‑M1/1‑20 (MQ=255)

                               ttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                     >  1:4148383‑M1/1‑19 (MQ=255)

                                tACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                     <  1:4427677‑M1/48‑31 (MQ=255)

                                 aCATCAGAGATATACCAttccatataacggccctgtacgcctggacgga                   >  1:2729854‑M1/1‑17 (MQ=255)

                                 aCATCAGAGATATACCAttccatataacggccctgtacgcctggacgga                   >  1:377605‑M1/1‑17 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggata                 <  1:3801345‑M1/50‑35 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggata                 <  1:4740203‑M1/50‑35 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                  <  1:5387219‑M1/49‑34 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                  <  1:3728163‑M1/49‑34 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                  <  1:1230493‑M1/49‑34 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                  >  1:3966844‑M1/1‑16 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                  <  1:3551856‑M1/49‑34 (MQ=255)

                                    tCAGAGATATACCAttccatataacggccctgtacgcctggacggataaa               <  1:4195997‑M1/50‑37 (MQ=255)

                                    tCAGAGATATACCAttccatataacggccctgtacgcctggacggata                 >  1:720626‑M1/1‑14 (MQ=255)

                                    tCAGAGATATACCAttccatataacggccctgtacgcctggacggata                 >  1:2642648‑M1/1‑14 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaagc             >  1:5398403‑M1/1‑12 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaagc             <  1:1086409‑M1/50‑39 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaagc             <  1:5429674‑M1/50‑39 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaag              <  1:1077399‑M1/49‑38 (MQ=255)

                                       gagaTATACCAttccatataacggccctgtacgcctggacggataaagcg            <  1:546105‑M1/50‑40 (MQ=255)

                                        agaTATACCAttccatataacggccctgtacgcctggacggataaagcgt           <  1:3681323‑M1/50‑41 (MQ=255)

                                        agaTATACCAttccatataacggccctgtacgcctggacggataaagcgt           >  1:3508175‑M1/1‑10 (MQ=255)

                                        agaTATACCAttccatataacggccctgtacgcctggacggataaagcgt           <  1:3857659‑M1/50‑41 (MQ=255)

                                         gaTATACCAttccatataacggccctgtacgcctggacggataaagcgtt          <  1:260675‑M1/50‑42 (MQ=255)

                                          atatACCAttccatataacggccctgtacgcctggacggataaagcgttt         <  1:4690558‑M1/50‑43 (MQ=255)

                                            ataCCAttccatataacggccctgtacgcctggacggataaagcgtttac       >  1:159384‑M1/1‑6 (MQ=255)

                                             taCCAttccatataacggccctgtacgcctggacggataaagcgtttac       <  1:4079234‑M1/49‑45 (MQ=255)

                                             taCCAttccatataacggccctgtacgcctggacggataaagcgtttac       <  1:1643162‑M1/49‑45 (MQ=255)

                                             taCCAttccatataacggccctgtacgcctggacggataaagcgtttac       <  1:4350281‑M1/49‑45 (MQ=255)

                                               ccAttccatataacggccctgtacgcctggacggataaagcgtttacgc     <  1:5197259‑M1/49‑47 (MQ=255)

                                               ccAttccatataacggccctgtacgcctggacggataaagcgtttacgc     <  1:1525619‑M1/49‑47 (MQ=255)

                                                 attccatataacggccctgtacgcctggtcggataaagcgtttacgcga   >  1:4865842‑M1/1‑1 (MQ=255)

                                                 attccatataacggccctgtacgcctggacggataaagcgtttacgcgac  <  1:2290302‑M1/50‑50 (MQ=255)

ATAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATCG  >  NC_000913/167434‑167532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`