BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	167,484	Δ5,964 bp		[fhuA]–fhuB	[fhuA], fhuC, fhuD, fhuB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	167484	173447	5964	113 [0]	[0] 113	[fhuA]–fhuB	[fhuA],fhuC,fhuD,fhuB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 167483	0 (0.000)	110 (1.510)	69/98	0.0	100%	intergenic (+219/‑1)	mrcB/fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor
*	?	NC_000913	173448 =	0 (0.000)	110 (1.510)	69/98	0.0	100%	intergenic (+4/+154)	fhuB/hemL	iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase

Only 100 of 113 total aligned reads displayed.

CGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACA  >  NC_000913/173399‑173497

taatcattctcgtttacgttatcattcactttacatcagagatataccat                                                   <  1:3011230‑M2/1‑1 (MQ=255)

taatcattctcgtttacgttatcattcactttacatcagagatataccat                                                   <  1:5273522‑M2/1‑1 (MQ=255)

taatcattctcgtttacgttatcattcactttacatcagagatataccat                                                   >  1:4372660‑M2/50‑50 (MQ=255)

 aatcattctcgtttacgttatcattcactttacatcagagatataccatt                                                  >  1:5170171‑M2/49‑50 (MQ=255)

  atcattctcgtttacgttatcattcactttacatcagagatataccatt                                                  <  1:4132391‑M2/2‑1 (MQ=255)

  atcattctcgtttacgttatcattcactttacatcagagatataccatt                                                  <  1:2024161‑M2/2‑1 (MQ=255)

  atcattctcgtttacgttatcattcactttacatcagagatataccaTTc                                                 <  1:219308‑M2/3‑1 (MQ=255)

  atcattctcgtttacgttatcattcactttacatcagagatataccaTTc                                                 <  1:1707606‑M2/3‑1 (MQ=255)

   tcattctcgtttacgttatcattcactttacatcagagatataccaTTc                                                 >  1:5500322‑M2/47‑49 (MQ=255)

    cattctcgtttacgttatcattcactttacatcagagatataccaTTCCa                                               >  1:1573091‑M2/46‑50 (MQ=255)

     attctcgtttacgttatcattcactttacatcagagatataccaTTCCat                                              <  1:4229602‑M2/6‑1 (MQ=255)

     attctcgtttacgttatcattcactttacatcagagatataccaTTCCa                                               <  1:3688135‑M2/5‑1 (MQ=255)

      ttctcgtttacgttatcattcactttacatcagagatataccaTTCCata                                             <  1:4144104‑M2/7‑1 (MQ=255)

        ctcgtttacgttatcattcactttacatcagagatataccaTTCCatat                                            <  1:1473173‑M2/8‑1 (MQ=255)

        ctcgtttacgttatcattcactttacatcagagatataccaTTCCatat                                            <  1:1255410‑M2/8‑1 (MQ=255)

         tcgtttacgttatcattcactttacatcagagatataccaTTCCATATaa                                          >  1:3481580‑M2/41‑50 (MQ=255)

          cgtttacgttatcattcactttacatcagagatataccaTTCCATATAAc                                         >  1:4324047‑M2/40‑50 (MQ=255)

           gtttacgttatcattcactttacatcagagatataccaTTCCAtata                                           <  1:2479374‑M2/9‑1 (MQ=255)

           gtttacgttatcattcactttacatcagagatataccaTTCCAtata                                           <  1:75249‑M2/9‑1 (MQ=255)

           gtttacgttatcattcactttacatcagagatataccaTTCCATATaa                                          <  1:862453‑M2/10‑1 (MQ=255)

           gtttacgttatcattcactttacatcagagatataccaTTCCATATaa                                          <  1:3562800‑M2/10‑1 (MQ=255)

           gtttacgttatcattcactttacatcagagatataccaTTCCATATaa                                          <  1:3484710‑M2/10‑1 (MQ=255)

           gtttacgttatcattcactttacatcagagatataccaTTCCATATaa                                          <  1:2132791‑M2/10‑1 (MQ=255)

           gtttacgttatcattcactttacatcagagatataccaTTCCATATAAc                                         <  1:2583365‑M2/11‑1 (MQ=255)

           gtttacgttatcattcactttacatcagagatataccaTTCCATATAACg                                        <  1:1604640‑M2/12‑1 (MQ=255)

            tttacgttatcattcactttacatcagagatataccaTTCCATATAACgg                                       <  1:4843874‑M2/13‑1 (MQ=255)

            tttacgttatcattcactttacatcagagatataccaTTCCATATAACgg                                       <  1:4393878‑M2/13‑1 (MQ=255)

              tacgttatcattcactttacatcagagatataccaTTCCATATAACGGc                                      <  1:3400158‑M2/14‑1 (MQ=255)

               acgttatcattcactttacatcagagatataccaTTCCATATAACGGccc                                    >  1:2054650‑M2/35‑50 (MQ=255)

               acgttatcattcactttacatcagagatataccaTTCCATATAACGGcc                                     <  1:3369551‑M2/15‑1 (MQ=255)

               acgttatcattcactttacatcagagatataccaTTCCATATAACGGcc                                     <  1:4458556‑M2/15‑1 (MQ=255)

                cgttatcattcactttacatcagagatataccaTTCCATATAACGgccca                                   <  1:3070769‑M2/17‑2 (MQ=255)

                cgttatcattcactttacatcagagatataccaTTCCATATAACGGccc                                    <  1:5174857‑M2/16‑1 (MQ=255)

                 gttatcattcactttacatcagagatataccaTTCCATATAACGGCCCTg                                  >  1:5360421‑M2/33‑50 (MQ=255)

                 gttatcattcactttacatcagagatataccaTTCCATATAACGGCCCTg                                  <  1:1386422‑M2/18‑1 (MQ=255)

                 gttatcattcactttacatcagagatataccaTTCCATATAACGGCCCTg                                  <  1:1276466‑M2/18‑1 (MQ=255)

                  ttatcattcactttacatcagagatataccaTTCCATATAACGGCCCTg                                  >  1:2673571‑M2/32‑49 (MQ=255)

                  ttatcattcactttacatcagagatataccaTTCCATATAACGGCCCTGt                                 <  1:5232726‑M2/19‑1 (MQ=255)

                   tatcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTa                                >  1:3787089‑M2/31‑50 (MQ=255)

                   tatcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTa                                >  1:5117182‑M2/31‑50 (MQ=255)

                    atcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTa                                <  1:2431827‑M2/20‑1 (MQ=255)

                    atcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTa                                <  1:3523582‑M2/20‑1 (MQ=255)

                     tcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTAc                               <  1:5130667‑M2/21‑1 (MQ=255)

                     tcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTAc                               <  1:267558‑M2/21‑1 (MQ=255)

                     tcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTAc                               <  1:5175177‑M2/21‑1 (MQ=255)

                     tcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTACg                              <  1:4874575‑M2/22‑1 (MQ=255)

                      cattcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGc                             >  1:2802477‑M2/28‑50 (MQ=255)

                      cattcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGc                             >  1:4890039‑M2/28‑50 (MQ=255)

                      cattcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGc                             >  1:843490‑M2/28‑50 (MQ=255)

                       attcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGcc                            >  1:5506133‑M2/27‑50 (MQ=255)

                       attcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGc                             <  1:2833261‑M2/23‑1 (MQ=255)

                        ttcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCt                           <  1:3622549‑M2/25‑1 (MQ=255)

                        ttcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCt                           >  1:5351621‑M2/26‑50 (MQ=255)

                         tcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTg                          >  1:1127502‑M2/25‑50 (MQ=255)

                         tcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTg                          >  1:453691‑M2/25‑50 (MQ=255)

                         tcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTg                          >  1:1598301‑M2/25‑50 (MQ=255)

                         tcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTg                          >  1:2035694‑M2/25‑50 (MQ=255)

                         tcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTg                          >  1:2286345‑M2/25‑50 (MQ=255)

                          cactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTg                          >  1:5188277‑M2/24‑49 (MQ=255)

                           actttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTgg                         <  1:1894734‑M2/27‑1 (MQ=255)

                           actttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGa                        >  1:2099717‑M2/23‑50 (MQ=255)

                            ctttacatcagagatataccaTTCCATATAACGGCCTTGTACGCCTGGAc                       <  1:2691549‑M2/29‑1 (MQ=255)

                            ctttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGAc                       >  1:931826‑M2/22‑50 (MQ=255)

                             tttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACg                      >  1:4363084‑M2/21‑50 (MQ=255)

                             tttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACg                      >  1:647719‑M2/21‑50 (MQ=255)

                             tttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACg                      >  1:845343‑M2/21‑50 (MQ=255)

                              ttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACg                      >  1:4148383‑M2/20‑49 (MQ=255)

                               tacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACg                      <  1:4427677‑M2/30‑1 (MQ=255)

                                acatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGa                    >  1:377605‑M2/18‑49 (MQ=255)

                                acatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGa                    >  1:2729854‑M2/18‑49 (MQ=255)

                                 catcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGAt                   <  1:5387219‑M2/33‑1 (MQ=255)

                                 catcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGAt                   <  1:3728163‑M2/33‑1 (MQ=255)

                                 catcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGAt                   <  1:1230493‑M2/33‑1 (MQ=255)

                                 catcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGAt                   >  1:3966844‑M2/17‑49 (MQ=255)

                                 catcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGAt                   <  1:3551856‑M2/33‑1 (MQ=255)

                                 catcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATa                  <  1:3801345‑M2/34‑1 (MQ=255)

                                 catcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATa                  <  1:4740203‑M2/34‑1 (MQ=255)

                                   tcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATaaa                <  1:4195997‑M2/36‑1 (MQ=255)

                                   tcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATa                  >  1:720626‑M2/15‑48 (MQ=255)

                                     agagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAg               <  1:1077399‑M2/37‑1 (MQ=255)

                                     agagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGc              <  1:1086409‑M2/38‑1 (MQ=255)

                                     agagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGc              <  1:5429674‑M2/38‑1 (MQ=255)

                                     agagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGc              >  1:5398403‑M2/13‑50 (MQ=255)

                                      gagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCg             <  1:546105‑M2/39‑1 (MQ=255)

                                       agatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGt            <  1:3857659‑M2/40‑1 (MQ=255)

                                       agatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGt            <  1:3681323‑M2/40‑1 (MQ=255)

                                       agatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGt            >  1:3508175‑M2/11‑50 (MQ=255)

                                        gatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGtt           <  1:260675‑M2/41‑1 (MQ=255)

                                         atataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGttt          <  1:4690558‑M2/42‑1 (MQ=255)

                                         atataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGtt           >  1:2248943‑M2/9‑49 (MQ=255)

                                           ataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAc        >  1:159384‑M2/7‑50 (MQ=255)

                                            taccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAc        <  1:1643162‑M2/44‑1 (MQ=255)

                                            taccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAc        <  1:4079234‑M2/44‑1 (MQ=255)

                                            taccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAc        <  1:4350281‑M2/44‑1 (MQ=255)

                                              ccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAcgc      <  1:5197259‑M2/46‑1 (MQ=255)

                                              ccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAcgc      <  1:1525619‑M2/46‑1 (MQ=255)

                                                aTTCCATATAACGGCCCTGTACGCCTGGTCGGATAAAGCGTTTACGCGa    >  1:4865842‑M2/2‑49 (MQ=255)

                                                aTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGAc   <  1:2290302‑M2/49‑1 (MQ=255)

                                                 ttCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACa  <  1:1002674/50‑1 (MQ=255)

                                                 ttCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACa  <  1:15348/50‑1 (MQ=255)

CGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACA  >  NC_000913/173399‑173497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`