BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,720,634	Δ1,442 bp	IS150‑mediated	insJ–insK	insJ, insK

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3720634	3722075	1442	108 [0]	[0] 106	insJ–insK	insJ,insK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3720633	0 (0.000)	106 (1.460)	58/98	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region
*	?	NC_000913	3722076 =	0 (0.000)	106 (1.460)	58/98	0.0	100%	intergenic (+27/+252)	insK/glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

Only 100 of 106 total aligned reads displayed.

GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGT  >  NC_000913/3722028‑3722123

tatatttctgcgcattcccagcctcctgtgttgatttccaacgagtataa                                                >  1:25260‑M2/49‑50 (MQ=255)

 atatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAAc                                               >  1:3825813‑M2/48‑50 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtataa                                                <  1:860773‑M2/2‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAAc                                               <  1:2020719‑M2/3‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAAc                                               <  1:2331081‑M2/3‑1 (MQ=255)

  tatttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACt                                              <  1:572126‑M2/4‑1 (MQ=255)

   atttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACtt                                             >  1:2032596‑M2/46‑50 (MQ=255)

   atttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACtt                                             >  1:5088097‑M2/46‑50 (MQ=255)

    tttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACttt                                            >  1:1434012‑M2/45‑50 (MQ=255)

    tttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACtt                                             <  1:124877‑M2/5‑1 (MQ=255)

    tttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACtt                                             <  1:3379602‑M2/5‑1 (MQ=255)

     ttctgcgcattcccagcctcctgtgttgatttccaacgagtatAACttt                                            >  1:1202874‑M2/44‑49 (MQ=255)

      tctgcgcattcccagcctcctgtgttgatttccaacgagtatAACTTTg                                           <  1:4709202‑M2/7‑1 (MQ=255)

      tctgcgcattcccagcctcctgtgttgatttccaacgagtatAACTTTg                                           <  1:4593393‑M2/7‑1 (MQ=255)

      tctgcgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGa                                          >  1:4447263‑M2/43‑50 (MQ=255)

         gcgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGAtt                                        >  1:4649899‑M2/40‑49 (MQ=255)

          cgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGAttt                                       <  1:1934569‑M2/11‑1 (MQ=255)

          cgcattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                      >  1:1908102‑M2/39‑50 (MQ=255)

           gcattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTtat                                     <  1:3381442‑M2/13‑1 (MQ=255)

           gcattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                      >  1:706979‑M2/38‑49 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTtata                                    <  1:3666254‑M2/14‑1 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTtata                                    <  1:2536858‑M2/14‑1 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTtata                                    <  1:3398174‑M2/14‑1 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                      >  1:3170010‑M2/37‑48 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                      >  1:1323460‑M2/37‑48 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                      >  1:1233223‑M2/37‑48 (MQ=255)

            cattcccagcctcctgtgttgatttccaacgagtatAACTTTGATTta                                      >  1:1951655‑M2/37‑48 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                   <  1:3573768‑M2/15‑1 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                   >  1:753358‑M2/36‑50 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                   <  1:1436346‑M2/15‑1 (MQ=255)

             attcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAg                                   >  1:404604‑M2/36‑50 (MQ=255)

               tcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                  >  1:1206692‑M2/34‑49 (MQ=255)

               tcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                  >  1:2433821‑M2/34‑49 (MQ=255)

               tcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                  >  1:2588189‑M2/34‑49 (MQ=255)

               tcccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGt                                  >  1:4648986‑M2/34‑49 (MQ=255)

                cccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTc                                 <  1:3918262‑M2/17‑1 (MQ=255)

                cccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTc                                 <  1:3037981‑M2/17‑1 (MQ=255)

                 ccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCa                                <  1:605833‑M2/18‑1 (MQ=255)

                 ccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCa                                <  1:5247895‑M2/18‑1 (MQ=255)

                 ccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAg                               >  1:154334‑M2/32‑50 (MQ=255)

                 ccagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAg                               <  1:194166‑M2/19‑1 (MQ=255)

                  cagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAgg                              >  1:4936301‑M2/31‑50 (MQ=255)

                  cagcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAgg                              <  1:5424630‑M2/20‑1 (MQ=255)

                    gcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTg                            >  1:641330‑M2/29‑50 (MQ=255)

                    gcctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTg                            >  1:1511555‑M2/29‑50 (MQ=255)

                     cctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgg                           >  1:4628160‑M2/28‑50 (MQ=255)

                     cctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgg                           >  1:1141022‑M2/28‑50 (MQ=255)

                     cctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgg                           >  1:5293853‑M2/28‑50 (MQ=255)

                     cctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgg                           >  1:2174368‑M2/28‑50 (MQ=255)

                      ctcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTggg                          <  1:4234345‑M2/24‑1 (MQ=255)

                       tcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgggg                         >  1:4793544‑M2/26‑50 (MQ=255)

                       tcctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgggg                         >  1:180370‑M2/26‑50 (MQ=255)

                         ctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgggg                         <  1:2962372‑M2/25‑1 (MQ=255)

                         ctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgggg                         <  1:5096438‑M2/25‑1 (MQ=255)

                         ctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTgggg                         <  1:3940009‑M2/25‑1 (MQ=255)

                         ctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGc                        <  1:532426‑M2/26‑1 (MQ=255)

                         ctgtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGc                        <  1:4022928‑M2/26‑1 (MQ=255)

                           gtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCttt                     >  1:3919984‑M2/22‑50 (MQ=255)

                           gtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCttt                     >  1:3931363‑M2/22‑50 (MQ=255)

                           gtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCttt                     >  1:5523586‑M2/22‑50 (MQ=255)

                           gtgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCttt                     >  1:1847883‑M2/22‑50 (MQ=255)

                            tgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCtttt                    >  1:1173215‑M2/21‑50 (MQ=255)

                            tgttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCtttt                    >  1:4357697‑M2/21‑50 (MQ=255)

                             gttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTtc                   >  1:1594920‑M2/20‑50 (MQ=255)

                              ttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTtct                  <  1:1372195‑M2/32‑1 (MQ=255)

                              ttgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTtct                  <  1:5456288‑M2/32‑1 (MQ=255)

                               tgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTtctc                 >  1:166216‑M2/18‑50 (MQ=255)

                               tgatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTtctc                 >  1:4786541‑M2/18‑50 (MQ=255)

                                gatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTtctc                 <  1:1947178‑M2/33‑1 (MQ=255)

                                gatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTtctc                 <  1:2018376‑M2/33‑1 (MQ=255)

                                gatttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTctct                >  1:963650‑M2/17‑50 (MQ=255)

                                 atttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTctct                <  1:4362497‑M2/34‑1 (MQ=255)

                                 atttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTctct                <  1:919355‑M2/34‑1 (MQ=255)

                                 atttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctg               <  1:1204188‑M2/35‑1 (MQ=255)

                                 atttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctg               <  1:597387‑M2/35‑1 (MQ=255)

                                 atttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctg               >  1:5527130‑M2/16‑50 (MQ=255)

                                 atttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctg               <  1:4069876‑M2/35‑1 (MQ=255)

                                  tttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgt              >  1:4581422‑M2/15‑50 (MQ=255)

                                  tttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgt              >  1:4651644‑M2/15‑50 (MQ=255)

                                   ttccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtc             >  1:2656959‑M2/14‑50 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg           >  1:3815917‑M2/12‑50 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg           >  1:4398560‑M2/12‑50 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg           >  1:2217171‑M2/12‑50 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct            <  1:4029024‑M2/38‑1 (MQ=255)

                                     ccaacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct            <  1:5062641‑M2/38‑1 (MQ=255)

                                      caacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg           <  1:246143‑M2/39‑1 (MQ=255)

                                      caacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg           <  1:3378740‑M2/39‑1 (MQ=255)

                                      caacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGc          >  1:1927660‑M2/11‑50 (MQ=255)

                                       aacgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGcc         >  1:4186689‑M2/10‑50 (MQ=255)

                                        acgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt        >  1:4977779‑M2/9‑50 (MQ=255)

                                        acgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCt        >  1:4502945‑M2/9‑50 (MQ=255)

                                         cgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCtt       >  1:264814‑M2/8‑50 (MQ=255)

                                         cgagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCtt       <  1:729335‑M2/43‑1 (MQ=255)

                                          gagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt      <  1:1446127‑M2/44‑1 (MQ=255)

                                          gagtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCttt      >  1:3931474‑M2/7‑50 (MQ=255)

                                           agtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTc     <  1:3938559‑M2/45‑1 (MQ=255)

                                            gtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCg    >  1:2460157‑M2/5‑50 (MQ=255)

                                            gtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCg    <  1:1732177‑M2/46‑1 (MQ=255)

                                            gtatAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCg    >  1:4209714‑M2/5‑50 (MQ=255)

                                              atAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt  >  1:4735428‑M2/3‑50 (MQ=255)

GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGT  >  NC_000913/3722028‑3722123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`