| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 29 (0.500) | 20 (0.420) | 19/80 | 0.8 | 44.7% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 26 (0.550) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < NC_000913/2798360‑2798313 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG < 1:33570/49‑1CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG < 1:1183558/49‑1CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:1989819/1‑49 TTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:1929108/1‑48 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG < 1:598463/49‑1 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:1584426/1‑49 AAGTAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:1353886/1‑48 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAA < 1:3779567/50‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAA < 1:1760097/50‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:1353768/1‑48 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 1:3437461/50‑1 AAATGCTCGAAAAATTCATGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 1:289704/50‑1 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAG > 1:245820/1‑47 GCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:3587222/1‑49 GCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG > 1:590306/1‑49 CTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGC < 1:3053499/49‑1 TCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 1:1510637/1‑50 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCA < 1:1376874/50‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGC < 1:2890919/49‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 1:2634200/1‑48 AAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAG > 1:311677/1‑50 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG < 1:1560201/50‑1 TTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG > 1:1821197/1‑49 TTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:1450125/1‑48 TGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:2981880/1‑47 GTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAG < 1:2526603/49‑1 GTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCA > 1:2504816/1‑48 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCA < 1:405178/49‑1 AGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 1:1452916/1‑49 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAA > 1:2095231/1‑49 GACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAA < 1:2017723/50‑1 GACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAA > 1:2232319/1‑49 atAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:1037339/3‑48 TGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTA < 1:4126026/50‑1 GAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG < 1:2736397/50‑1 AAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGC < 1:797858/50‑1 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA < 1:416797/50‑1 AGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCA < 1:981515/50‑1 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC < 1:1815881/50‑1 GAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCAC > 1:1027146/1‑50 AAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACC > 1:3062856/1‑50 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT > 1:1452178/1‑50 GAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTG < 1:1843239/50‑1 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG > 1:1183320/1‑50 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < NC_000913/2798360‑2798313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |