| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 29 (0.500) | 20 (0.420) | 19/80 | 0.8 | 44.7% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 26 (0.550) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
GGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT > NC_000913/2798316‑2798413 | ccaggtgctaattttttcctggcgctctgccagttcacgctgctgctgtt > 1:1183320‑M1/49‑50 (MQ=255) caggtgctaattttttcctggcgctctgccagttcacgctgctgctgttc < 1:1843239‑M1/3‑1 (MQ=255) aggtgctaattttttcctggcgctctgccagttcacgctgctgctgttct > 1:1452178‑M1/47‑50 (MQ=255) ggtgctaattttttcctggcgctctgccagttcacgctgctgctgttctt > 1:3062856‑M1/46‑50 (MQ=255) gtgctaattttttcctggcgctctgccagttcacgctgctgctgttcttc > 1:1027146‑M1/45‑50 (MQ=255) gtgctaattttttcctggcgctctgccagttcacgctgctgctgttcttc < 1:1815881‑M1/6‑1 (MQ=255) tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct < 1:981515‑M1/7‑1 (MQ=255) tgctaattttttcctggcgctctgccagttcacgctgctgctgttcttct < 1:416797‑M1/7‑1 (MQ=255) gctaattttttcctggcgctctgccagttcacgctgctgctgttcttctt < 1:797858‑M1/8‑1 (MQ=255) aaTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt > 1:2573974/1‑50 (MQ=255) aaTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt > 1:1339914/1‑50 (MQ=255) ctaattttttcctggcgctctgccagttcacgctgctgctgttcttcttc < 1:2736397‑M1/9‑1 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt < 1:3229868/49‑1 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCGCGCTGCTGCTGTTCTTCTTCTTCa < 1:3709574/50‑1 (MQ=255) taattttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCa < 1:4126026‑M1/10‑1 (MQ=255) attttttcctggcgctctgccagttcacgctgctgctgttcttcttat > 1:1037339‑M1/39‑46 (MQ=255) tttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtc < 1:2017723‑M1/14‑1 (MQ=255) ttttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtc > 1:2232319‑M1/36‑49 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtct < 1:451592/49‑1 (MQ=255) ttcctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctt > 1:2095231‑M1/34‑49 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtcttt > 1:3759979/1‑50 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:2450199/49‑1 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:4212087/49‑1 (MQ=255) ggCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttct > 1:568324/1‑50 (MQ=255) ctggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttct > 1:1452916‑M1/31‑49 (MQ=255) tggcgctctgccagttcacgctgctgctgTTCTTCTTCACGtctttctt < 1:405178‑M1/20‑1 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt < 1:2623428/48‑1 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt < 1:1018694/48‑1 (MQ=255) ctgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc < 1:2526603‑M1/27‑1 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGa < 1:2255430/48‑1 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACa < 1:3587442/50‑1 (MQ=255) tgccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGAc > 1:2504816‑M1/22‑48 (MQ=255) cAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACaa > 1:1993595/1‑50 (MQ=255) gTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAcc > 1:4238411/1‑50 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACaa > 1:1450125‑M1/20‑48 (MQ=255) ccagttcacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACa > 1:2981880‑M1/20‑47 (MQ=255) cACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt < 1:4336890/49‑1 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:1260287/50‑1 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGaa > 1:1821197‑M1/14‑49 (MQ=255) cacgctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:1560201‑M1/37‑1 (MQ=255) ctgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt < 1:988240/50‑1 (MQ=255) ctgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt > 1:3053439/1‑50 (MQ=255) tgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 1:1877338/1‑50 (MQ=255) gctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt > 1:3777924/1‑50 (MQ=255) ctgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttttt > 1:311677‑M1/10‑50 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt < 1:691108/48‑1 (MQ=255) tgctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 1:1376874‑M1/42‑1 (MQ=255) gctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 1:2890919‑M1/42‑1 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:2634200‑M1/7‑48 (MQ=255) ctgctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa > 1:1510637‑M1/7‑50 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 1:1350706/48‑1 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:3381152/1‑48 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa < 1:3762460/50‑1 (MQ=255) tgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:4340025/1‑50 (MQ=255) gctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg < 1:3053499‑M1/45‑1 (MQ=255) ttcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCa < 1:867504/50‑1 (MQ=255) ctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGc > 1:590306‑M1/4‑49 (MQ=255) ctgTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGc > 1:3587222‑M1/4‑49 (MQ=255) tcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt > 1:2865906/1‑50 (MQ=255) tcttcttcttcACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCAt > 1:2047642/1‑50 (MQ=255) TTCTTCTTCACGTCTTTCTTTAGTGACAACCATGAATTTTTCGAGCAttt < 1:289704‑M1/50‑1 (MQ=255) | GGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAGCATTT > NC_000913/2798316‑2798413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |