| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 29 (0.500) | 20 (0.420) | 19/80 | 0.8 | 44.7% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 26 (0.550) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
CCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAG > NC_000913/2798313‑2798408 | ccAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGtt > 1:1183320‑M2/1‑48 (MQ=255) cAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttc < 1:1843239‑M2/50‑4 (MQ=255) aGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttct > 1:1452178‑M2/1‑46 (MQ=255) ggTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttctt > 1:3062856‑M2/1‑45 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc > 1:1027146‑M2/1‑44 (MQ=255) gTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttc < 1:1815881‑M2/50‑7 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct < 1:981515‑M2/50‑8 (MQ=255) tGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttct < 1:416797‑M2/50‑8 (MQ=255) gCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttctt < 1:797858‑M2/50‑9 (MQ=255) cTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttc < 1:2736397‑M2/50‑10 (MQ=255) tAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttca < 1:4126026‑M2/50‑11 (MQ=255) aaTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt > 1:1339914/1‑50 (MQ=255) aaTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt > 1:2573974/1‑50 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttctt < 1:3229868/49‑1 (MQ=255) aTTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttat > 1:1037339‑M2/1‑38 (MQ=255) ttttttCCTGGCGCTCTGCCAGTTCGCGCTGCTGCTGTTCTTCTTCTTCa < 1:3709574/50‑1 (MQ=255) tttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtc < 1:2017723‑M2/50‑15 (MQ=255) ttttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtc > 1:2232319‑M2/1‑35 (MQ=255) ttCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctt > 1:2095231‑M2/1‑33 (MQ=255) ccTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtct < 1:451592/49‑1 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttct > 1:1452916‑M2/1‑30 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtcttt > 1:3759979/1‑50 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:2450199/49‑1 (MQ=255) cTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctt < 1:4212087/49‑1 (MQ=255) tGGCGCTCTGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctt < 1:405178‑M2/49‑21 (MQ=255) ggCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGtctttct > 1:568324/1‑50 (MQ=255) ctGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgac < 1:2526603‑M2/49‑28 (MQ=255) tGCCAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgac > 1:2504816‑M2/1‑21 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt < 1:2623428/48‑1 (MQ=255) tGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGt < 1:1018694/48‑1 (MQ=255) ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgacaa > 1:1450125‑M2/1‑19 (MQ=255) ccAGTTCACGCTGCTGCTGttcttcttcacgtctttctttagtgaca > 1:2981880‑M2/1‑19 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGa < 1:2255430/48‑1 (MQ=255) ccAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACa < 1:3587442/50‑1 (MQ=255) cAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACaa > 1:1993595/1‑50 (MQ=255) gTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAAcc > 1:4238411/1‑50 (MQ=255) cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaat < 1:1560201‑M2/50‑38 (MQ=255) cACGCTGCTGCTGttcttcttcacgtctttctttagtgacaaccctgaa > 1:1821197‑M2/1‑13 (MQ=255) cACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCt < 1:4336890/49‑1 (MQ=255) gctgctgctGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAt < 1:1260287/50‑1 (MQ=255) ctgctgctgttcttcttcacgtctttctttagtgacaaccctgaattttt > 1:311677‑M2/1‑9 (MQ=255) ctgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt > 1:3053439/1‑50 (MQ=255) ctgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtt < 1:988240/50‑1 (MQ=255) tgctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc < 1:1376874‑M2/50‑43 (MQ=255) tgctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt > 1:1877338/1‑50 (MQ=255) gctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc < 1:2890919‑M2/49‑43 (MQ=255) gctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAtttt > 1:3777924/1‑50 (MQ=255) ctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttcga > 1:1510637‑M2/1‑6 (MQ=255) ctgctgttcttcttcacgtctttctttagtgacaaccctgaatttttc > 1:2634200‑M2/1‑6 (MQ=255) ctgctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAAttt < 1:691108/48‑1 (MQ=255) gctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgag < 1:3053499‑M2/49‑46 (MQ=255) ctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagc > 1:3587222‑M2/1‑3 (MQ=255) ctgttcttcttcacgtctttctttagtgacaaccctgaatttttcgagc > 1:590306‑M2/1‑3 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc > 1:3381152/1‑48 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTc < 1:1350706/48‑1 (MQ=255) ctgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGa < 1:3762460/50‑1 (MQ=255) tgTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAg > 1:4340025/1‑50 (MQ=255) | CCAGGTGCTAATTTTTTCCTGGCGCTCTGCCAGTTCACGCTGCTGCTGTTCTTCTTCTTCACGTCTTTCTTTAGTGACAACCCTGAATTTTTCGAG > NC_000913/2798313‑2798408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |