| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 33 (0.570) | 28 (0.520) | 24/92 | 0.6 | 48.7% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 28 (0.520) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846251‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > NC_000913/2867269‑2867316 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 1:1362640/50‑1 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:3685947/1‑50 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:3569986/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:4296574/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:2249968/50‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 1:2222873/50‑1 GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG > 1:2184922/1‑50 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGG < 1:1113096/50‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:3387138/1‑49 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAG < 1:2520831/50‑1 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:3499965/1‑47 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:2306482/1‑47 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:3171632/1‑50 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGA < 1:126653/49‑1 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:1234501/1‑49 TTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:2660193/1‑50 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA > 1:3038532/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:4286559/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGTCGACATCTC > 1:3594496/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:50154/1‑49 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2650602/1‑48 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:2688416/1‑50 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:1560148/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:2851489/49‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:2818394/1‑50 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG < 1:2125655/50‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:1744800/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:573178/1‑50 CCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC < 1:1279705/50‑1 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGCGCGCGACGCGCA > 1:1549978/1‑49 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > 1:1717430/1‑49 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846251‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > NC_000913/2867269‑2867316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |