| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 33 (0.570) | 28 (0.520) | 24/92 | 0.6 | 48.7% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 28 (0.520) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 | aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 1:1362640‑M1/50‑1 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAca < 1:712924/50‑1 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:3569986‑M1/1‑47 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:3685947‑M1/1‑47 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcag > 1:2819614/1‑50 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:4296574‑M1/1‑45 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:2249968‑M1/50‑7 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagcca < 1:1716254/50‑1 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg < 1:2222873‑M1/50‑9 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagccagc < 1:3530052/50‑1 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAcagccagc > 1:236377/1‑49 (MQ=255) gACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg > 1:2184922‑M1/1‑40 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcgg < 1:1113096‑M1/50‑12 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:3387138‑M1/1‑37 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCt < 1:1827100/50‑1 (MQ=255) aTTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCt < 1:1368227/50‑1 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgag < 1:2520831‑M1/50‑16 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:3499965‑M1/1‑35 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:2306482‑M1/1‑35 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTg > 1:54989/1‑50 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag > 1:3171632‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgaga < 1:126653‑M1/49‑17 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGttt < 1:3467499/50‑1 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg > 1:1854837/1‑50 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTg < 1:3156179/50‑1 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 1:1234501‑M1/1‑30 (MQ=255) ttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:2660193‑M1/1‑29 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgta < 1:2312371/49‑1 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgaca > 1:3038532‑M1/1‑27 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtag > 1:3683884/1‑49 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagta < 1:1725002/50‑1 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:4286559‑M1/1‑25 (MQ=255) gTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagta > 1:314813/1‑49 (MQ=255) ttCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTgtagta > 1:2047538/1‑48 (MQ=255) ttCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTaaa < 1:3465779/50‑1 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagagtcgacatctc > 1:3594496‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAg < 1:798602/49‑1 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:50154‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACt > 1:4038683/1‑50 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:2650602‑M1/1‑17 (MQ=255) ttACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTc < 1:3608449/50‑1 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:2688416‑M1/1‑16 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:1560148‑M1/1‑16 (MQ=255) tACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTc > 1:3461726/1‑49 (MQ=255) aCCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTcca > 1:3324879/1‑50 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt < 1:2851489‑M1/49‑36 (MQ=255) ccAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTccac > 1:967032/1‑50 (MQ=255) ccAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTcca < 1:216964/49‑1 (MQ=255) cAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTccacc < 1:243503/50‑1 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg > 1:2818394‑M1/1‑12 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg < 1:2125655‑M1/50‑39 (MQ=255) aaaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcg > 1:1744800‑M1/1‑12 (MQ=255) aaCAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCcaccac < 1:105525/50‑1 (MQ=255) aCAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACt < 1:2587745/50‑1 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac > 1:573178‑M1/1‑8 (MQ=255) gCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTcc < 1:3363501/50‑1 (MQ=255) cACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCg < 1:1942458/50‑1 (MQ=255) ccGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgc < 1:1279705‑M1/50‑47 (MQ=255) ccGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGc < 1:1994040/50‑1 (MQ=255) cGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCa < 1:2107245/50‑1 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagcgcgcgacgcgca > 1:1549978‑M1/1‑2 (MQ=255) gACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAg > 1:4235774/1‑50 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 1:1717430‑M1/1‑1 (MQ=255) aCAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAgg > 1:338781/1‑50 (MQ=255) | ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |