| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 33 (0.570) | 28 (0.520) | 24/92 | 0.6 | 48.7% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 28 (0.520) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
GCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867222‑2867318 | gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca > 1:3569986‑M2/48‑50 (MQ=255)gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca > 1:3685947‑M2/48‑50 (MQ=255)gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatca > 1:582729/1‑50 (MQ=255) ccATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcat < 1:2897259/50‑1 (MQ=255) ccATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatca < 1:658455/49‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:4296574‑M2/46‑50 (MQ=255) cATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcatc < 1:357433/50‑1 (MQ=255) cATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGatcatc > 1:412378/1‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc < 1:2249968‑M2/6‑1 (MQ=255) aTAACGGCGGGCAATTTTTACCACCAGACGCAAATTACTCTCGATCATcc < 1:2424315/50‑1 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg < 1:2222873‑M2/8‑1 (MQ=255) aCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcggc < 1:1569049/50‑1 (MQ=255) gaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg > 1:2184922‑M2/41‑50 (MQ=255) accattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcgg < 1:1113096‑M2/11‑1 (MQ=255) cggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCggcggc > 1:591117/1‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:3387138‑M2/38‑49 (MQ=255) gggCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCggcggc > 1:3152236/1‑48 (MQ=255) gggCAATTTTTAACACCAGACGCAAGTTAATCTCGATCATCCggcggc > 1:311874/1‑48 (MQ=39) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:2306482‑M2/36‑47 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:3499965‑M2/36‑47 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCgag < 1:2520831‑M2/15‑1 (MQ=255) gCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCgaga < 1:3135841/50‑1 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCgaga < 1:126653‑M2/16‑1 (MQ=255) cagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag > 1:3171632‑M2/34‑50 (MQ=255) aaTTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg > 1:3007303/1‑50 (MQ=255) aaTTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg > 1:1358707/1‑50 (MQ=255) aaTTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAgg > 1:1884875/1‑50 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:1234501‑M2/31‑49 (MQ=255) ttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:2660193‑M2/30‑50 (MQ=255) ttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGAc < 1:3066697/49‑1 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 1:3038532‑M2/28‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:4286559‑M2/26‑50 (MQ=255) caccaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtctc > 1:2317416/1‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGTCGACAtctc > 1:3594496‑M2/23‑49 (MQ=255) aGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg < 1:2316634/50‑1 (MQ=255) aGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg < 1:3001065/50‑1 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:50154‑M2/19‑49 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:2650602‑M2/18‑48 (MQ=255) aCGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:449879/1‑48 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:2688416‑M2/17‑50 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:1560148‑M2/17‑50 (MQ=255) gCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 1:1603836/1‑50 (MQ=255) gCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 1:1503699/1‑50 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:2851489‑M2/35‑1 (MQ=255) aaGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 1:512264/1‑50 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:2818394‑M2/13‑50 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg < 1:2125655‑M2/38‑1 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:1744800‑M2/13‑50 (MQ=255) aGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:1617699/1‑50 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:573178‑M2/9‑50 (MQ=255) aCTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:3116953/1‑50 (MQ=255) aCTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:128321/1‑50 (MQ=255) ctctCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg < 1:4002455/50‑1 (MQ=255) ctctCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 1:2043063/49‑1 (MQ=255) tctcGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:1638457/1‑50 (MQ=255) ccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc < 1:1279705‑M2/46‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGCGCGCGACGCGCa > 1:1549978‑M2/3‑49 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa > 1:1717430‑M2/2‑49 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:3214280/50‑1 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa > 1:1227203/1‑50 (MQ=255) | GCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867222‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |