| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 64 [0] | [0] 64 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 62 (1.070) | 41/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:2912391/50‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:2673649/50‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:2969129/49‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:4177918/49‑1CTCAGACACATTACATTCACTGTATTTATAACAACAGCAATGAATACTAA < 1:169669/50‑1 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:3332467/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:3420306/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:4020902/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:473026/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA < 1:2041149/50‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:3814664/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:2609363/48‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:3092134/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:3251509/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:410448/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:4354906/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:3513696/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:4218926/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:399889/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:870207/1‑50 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:1560597/1‑50 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:1247793/1‑49 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:3554832/1‑49 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:1189216/1‑49 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:2788590/50‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:3521466/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:1109935/1‑49 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:1952870/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:3214893/49‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:4126740/50‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:936140/1‑49 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:1480062/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2647500/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 1:1023356/49‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:3657230/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:129936/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:780794/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:1321195/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:611461/1‑48 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:2249783/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:3855917/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:926270/50‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:1310650/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:2726843/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:821743/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:1336119/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:1769857/50‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:181403/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:2682376/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:3790406/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:2071450/1‑50 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:3018214/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:438805/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:1997982/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:1473504/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:3103873/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:1425854/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:1979195/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:877551/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:918808/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:2707415/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:4365525/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |