| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 64 [0] | [0] 64 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 62 (1.070) | 41/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
AAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367596‑3367692 | ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:2912391‑M2/3‑1 (MQ=255)ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:2673649‑M2/3‑1 (MQ=255)ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:2969129‑M2/2‑1 (MQ=255)ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:4177918‑M2/2‑1 (MQ=255)ctcagacacattacattcactgtatttataacaacagcaatgaatacTaa < 1:169669‑M2/3‑1 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 1:3332467‑M2/46‑49 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 1:3420306‑M2/46‑49 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 1:4020902‑M2/46‑49 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAAc < 1:2609363‑M2/4‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:473026‑M2/45‑50 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa < 1:2041149‑M2/6‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:3814664‑M2/5‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:3092134‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:3251509‑M2/8‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:410448‑M2/41‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:4354906‑M2/41‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:3513696‑M2/41‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:4218926‑M2/11‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:399889‑M2/39‑49 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:870207‑M2/38‑50 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:1560597‑M2/38‑50 (MQ=255) tacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:1247793‑M2/37‑49 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:3554832‑M2/34‑49 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:1189216‑M2/34‑49 (MQ=255) ttcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGa < 1:2788590‑M2/18‑1 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg < 1:3521466‑M2/19‑1 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:1109935‑M2/31‑49 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:3214893‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:1952870‑M2/20‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc < 1:4126740‑M2/22‑1 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:936140‑M2/28‑49 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa < 1:1023356‑M2/24‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:2647500‑M2/26‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:1480062‑M2/26‑50 (MQ=255) atttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:3657230‑M2/25‑49 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:611461‑M2/24‑48 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:780794‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:1321195‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCa < 1:129936‑M2/27‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa < 1:3855917‑M2/31‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa > 1:2249783‑M2/20‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:926270‑M2/33‑1 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:1310650‑M2/17‑50 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg < 1:2726843‑M2/35‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:821743‑M2/37‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:1336119‑M2/37‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:1769857‑M2/41‑1 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata > 1:181403‑M2/9‑50 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:2071450‑M2/8‑50 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:2682376‑M2/8‑50 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:3790406‑M2/8‑50 (MQ=255) gaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:3018214‑M2/7‑49 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:438805‑M2/45‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:1997982‑M2/45‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 1:1473504‑M2/46‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:2707415‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:918808‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 1:877551‑M2/4‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:3103873‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 1:1425854‑M2/4‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:1979195‑M2/47‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 1:4365525‑M2/2‑50 (MQ=255) tAACCATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:3738484/1‑50 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:3038195/1‑50 (MQ=255) | AAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367596‑3367692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |