| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 64 [0] | [0] 64 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 62 (1.070) | 41/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:3752767/50‑1 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:2816956/1‑49 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:2673649‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:2912391‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:4177918‑M1/49‑3 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:2969129‑M1/49‑3 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACAGCAATGAATACtaa < 1:169669‑M1/50‑4 (MQ=255) cAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac > 1:3332467‑M1/1‑45 (MQ=255) cAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac > 1:4020902‑M1/1‑45 (MQ=255) cAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac > 1:3420306‑M1/1‑45 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:473026‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa < 1:2041149‑M1/50‑7 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:3814664‑M1/49‑6 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac < 1:2609363‑M1/48‑5 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:3092134‑M1/50‑9 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:3251509‑M1/50‑9 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:3513696‑M1/1‑40 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:410448‑M1/1‑40 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:4354906‑M1/1‑40 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg < 1:4218926‑M1/50‑12 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:399889‑M1/1‑38 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:870207‑M1/1‑37 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:1560597‑M1/1‑37 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:1247793‑M1/1‑36 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:3554832‑M1/1‑33 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:1189216‑M1/1‑33 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagga < 1:2788590‑M1/50‑19 (MQ=255) cACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag < 1:3521466‑M1/49‑20 (MQ=255) cACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:1109935‑M1/1‑30 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:1952870‑M1/49‑21 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:3214893‑M1/49‑21 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac < 1:4126740‑M1/50‑23 (MQ=255) tGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:936140‑M1/1‑27 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:1480062‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:2647500‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta < 1:1023356‑M1/49‑25 (MQ=255) aTTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:3657230‑M1/1‑24 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:129936‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:1321195‑M1/49‑27 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:780794‑M1/49‑27 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:611461‑M1/1‑23 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 1:2249783‑M1/1‑19 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca < 1:3855917‑M1/50‑32 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:926270‑M1/50‑34 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc > 1:1310650‑M1/1‑16 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg < 1:2726843‑M1/50‑36 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 1:821743‑M1/50‑38 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 1:1336119‑M1/50‑38 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:1769857‑M1/50‑42 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:181403‑M1/1‑8 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:3790406‑M1/1‑7 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:2682376‑M1/1‑7 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:2071450‑M1/1‑7 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:3018214‑M1/1‑6 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga < 1:438805‑M1/50‑46 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga < 1:1997982‑M1/50‑46 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 1:1473504‑M1/50‑47 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:3103873‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc > 1:1425854‑M1/1‑3 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:1979195‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc > 1:877551‑M1/1‑3 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:918808‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:2707415‑M1/50‑48 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg > 1:4365525‑M1/1‑1 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |