| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3593298 | 17 (0.290) | 23 (0.400) | 20/98 | 1.3 | 59.7% | coding (140/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3593309 = | 14 (0.240) | coding (129/714 nt) | livF | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593252‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGAT > NC_000913/3593309‑3593356 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCC > 1:1521080/1‑50 TTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCG > 1:1411818/1‑50 CGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCC > 1:2968456/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:1906824/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC < 1:4137097/50‑1 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCC > 1:3973537/1‑50 GCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCC < 1:3539435/49‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 1:4138139/50‑1 CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTC < 1:1086071/50‑1 GTGGCACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCG < 1:1428963/48‑1 ACGCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAAT > 1:3869848/1‑50 GCGGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCA < 1:91699/50‑1 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC > 1:2486140/1‑50 GGATCGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGC > 1:2871367/1‑50 CGCCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGA > 1:3159797/1‑50 CCGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACA < 1:1707427/50‑1 CGCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAA > 1:4240914/1‑50 GCATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAAT > 1:2695772/1‑50 CATAACGTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATC > 1:73127/1‑50 GTGCCGAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCC > 1:329373/1‑50 GAGCACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATT < 1:705221/50‑1 CACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGAT < 1:814397/50‑1 CACCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGA > 1:1241667/1‑49 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3593252‑3593298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGAT > NC_000913/3593309‑3593356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |