New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3593298	17 (0.290)	23 (0.400)	20/98	1.3	59.7%	coding (140/714 nt)	livF	branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF
	?	NC_000913	3593309 =	14 (0.240)					coding (129/714 nt)	livF	branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF

AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGC  >  NC_000913/3593252‑3593346                                               |                                                 aaTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccc                                               >  1:1521080‑M1/1‑47 (MQ=255) aaTTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAgg                                               >  1:158185/1‑50 (MQ=255)   ttCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccg                                             >  1:1411818‑M1/1‑45 (MQ=255)    tCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtgg                                            >  1:1039148/1‑50 (MQ=255)    tCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAggtgg                                            >  1:4313028/1‑50 (MQ=255)     cGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgcc                                           >  1:2968456‑M1/1‑43 (MQ=255)      gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc                                          <  1:4137097‑M1/50‑9 (MQ=255)      gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc                                          >  1:3973537‑M1/1‑42 (MQ=255)      gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccc                                          >  1:1906824‑M1/1‑42 (MQ=255)      gCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgcc                                           <  1:3539435‑M1/49‑8 (MQ=255)       cccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGttt                                         <  1:3033619/50‑1 (MQ=255)        ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtttt                                        >  1:4308091/1‑50 (MQ=255)        ccGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGtttt                                        <  1:2190730/50‑1 (MQ=255)           cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttc                                     <  1:1086071‑M1/50‑14 (MQ=255)           cTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttc                                     <  1:4138139‑M1/50‑14 (MQ=255)              gtggCACGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcg                                    <  1:1428963‑M1/48‑15 (MQ=255)                 gCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgcccc                               >  1:1653796/1‑50 (MQ=255)                   aCGCGGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaat                             >  1:3869848‑M1/1‑29 (MQ=255)                     gcgGATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatca                           <  1:91699‑M1/50‑24 (MQ=255)                       ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc                         >  1:2486140‑M1/1‑25 (MQ=255)                       ggATCGCCGCATAACGTGCCGAGCAccccgccccgttcgcgccaatcagc                         >  1:2871367‑M1/1‑25 (MQ=255)                           cgccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtga                     >  1:3159797‑M1/1‑21 (MQ=255)                           cgccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGcc                      >  1:1093035/1‑49 (MQ=255)                            gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa                    >  1:3389041/1‑50 (MQ=255)                            gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa                    >  1:3412431/1‑50 (MQ=255)                             ccgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgaca                   <  1:1707427‑M1/50‑32 (MQ=255)                              cgcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaa                  >  1:4240914‑M1/1‑18 (MQ=255)                               gcATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaat                 >  1:2695772‑M1/1‑17 (MQ=255)                                cATAACGTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatc                >  1:73127‑M1/1‑16 (MQ=255)                                  tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg              <  1:3871345/50‑1 (MQ=255)                                      gTGCCGAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccc          >  1:329373‑M1/1‑10 (MQ=255)                                       tGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGAc          >  1:2197215/1‑49 (MQ=255)                                           gAGCAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgatt     <  1:705221‑M1/50‑46 (MQ=255)                                           gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct     <  1:2951325/50‑1 (MQ=255)                                           gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct     >  1:2207913/1‑50 (MQ=255)                                            aGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc    <  1:2286273/50‑1 (MQ=255)                                             gCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCg   <  1:1225877/50‑1 (MQ=255)                                              cAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgattgat  <  1:814397‑M1/50‑49 (MQ=255)                                              cAccccgccccgttcgcgccaatcagcgtgacaatctcgccctgattga   >  1:1241667‑M1/1‑2 (MQ=255)                                              cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc  <  1:3696663/50‑1 (MQ=255)                                               |                                                 AATTCGCCCGCTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGC  >  NC_000913/3593252‑3593346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.