New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3593298	17 (0.290)	23 (0.400)	20/98	1.3	59.7%	coding (140/714 nt)	livF	branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF
	?	NC_000913	3593309 =	14 (0.240)					coding (129/714 nt)	livF	branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF

CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATAT  >  NC_000913/3593262‑3593358                                                |                                                  aattcgcccgctggtggcacgcggatcgccgcataacgtgccgagcaccc                                                 >  1:1521080‑M2/48‑50 (MQ=255)   ttcgcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccg                                               >  1:1411818‑M2/46‑50 (MQ=255)     cgcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgcc                                             >  1:2968456‑M2/44‑50 (MQ=255)      gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccc                                            <  1:4137097‑M2/8‑1 (MQ=255)      gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccc                                            >  1:3973537‑M2/43‑50 (MQ=255)      gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgccc                                            >  1:1906824‑M2/43‑50 (MQ=255)      gcccgctggtggcacgcggatcgccgcataacgtgccgagcaccccgcc                                             <  1:3539435‑M2/7‑1 (MQ=255)       gCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTccccgcccc                                           >  1:1653796/1‑50 (MQ=255)           ctggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTc                                       <  1:1086071‑M2/13‑1 (MQ=255)           ctggtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTc                                       <  1:4138139‑M2/13‑1 (MQ=255)              gtggcacgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTcg                                      <  1:1428963‑M2/14‑1 (MQ=255)                 cgccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGcc                                  >  1:1093035/1‑49 (MQ=255)                  gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa                                >  1:3389041/1‑50 (MQ=255)                  gccgcATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCaa                                >  1:3412431/1‑50 (MQ=255)                   acgcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAAt                               >  1:3869848‑M2/30‑50 (MQ=255)                     gcggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCa                             <  1:91699‑M2/23‑1 (MQ=255)                       ggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGc                           >  1:2486140‑M2/26‑50 (MQ=255)                       ggatcgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGc                           >  1:2871367‑M2/26‑50 (MQ=255)                        tAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCg                          <  1:3871345/50‑1 (MQ=255)                           cgccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGa                       >  1:3159797‑M2/22‑50 (MQ=255)                             tGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGAc                      >  1:2197215/1‑49 (MQ=255)                             ccgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACa                     <  1:1707427‑M2/31‑1 (MQ=255)                              cgcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACaa                    >  1:4240914‑M2/19‑50 (MQ=255)                               gcataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAt                   >  1:2695772‑M2/18‑50 (MQ=255)                                cataacgtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtc                  >  1:73127‑M2/17‑50 (MQ=255)                                 gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct                 >  1:2207913/1‑50 (MQ=255)                                 gAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtct                 <  1:2951325/50‑1 (MQ=255)                                  aGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAAtctc                <  1:2286273/50‑1 (MQ=255)                                   gCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCg               <  1:1225877/50‑1 (MQ=255)                                    cAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGc              <  1:3696663/50‑1 (MQ=255)                                      gtgccgagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGccc            >  1:329373‑M2/11‑50 (MQ=255)                                      aGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGccc            >  1:1752808/1‑50 (MQ=255)                                           gtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgatt       >  1:374721/1‑50 (MQ=255)                                           gtTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgat        <  1:114318/49‑1 (MQ=255)                                           gagcaCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgatt       <  1:705221‑M2/45‑1 (MQ=255)                                              caCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgattgat    <  1:814397‑M2/48‑1 (MQ=255)                                              caCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCtgattga     >  1:1241667‑M2/3‑49 (MQ=255)                                                ccccgccccgTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGatat  <  1:809115/50‑1 (MQ=255)                                                |                                                  CTGGTGGCACGCGGATCGCCGCATAACGTGCCGAGCAAGGTGGTTTTCCCCGCCCCGTTCGCGCCAATCAGCGTGACAATCTCGCCCTGATTGATAT  >  NC_000913/3593262‑3593358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.