| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 48 [0] | [0] 46 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 46 (0.810) | 35/96 | 0.1 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT > NC_000913/3906599‑3906644 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:4342075/1‑50AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:267564/1‑50 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:2371346/1‑50 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCG < 1:3576389/50‑1 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT < 1:921232/50‑1 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:3054276/1‑50 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:2104386/50‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:2334135/1‑49 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC < 1:392817/47‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC < 1:1915858/47‑1 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:4164232/1‑50 GTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:779122/1‑49 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:800033/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:2446617/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:2469637/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:2848264/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:279120/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:310528/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:626861/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:1649616/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:2417200/1‑50 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:4259662/1‑50 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC > 1:1069148/1‑50 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT > 1:2266209/1‑50 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT < 1:3975253/50‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG < 1:1673542/50‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:1700090/49‑1 AGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 1:667934/1‑50 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT < 1:2916004/49‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:1199868/50‑1 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:1480187/1‑50 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:1069231/1‑50 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT < 1:813769/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 1:1201050/50‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:3868695/50‑1 TCTTGCGAGGATAAGTGCCGGCTTCACCAGTATTCTCTGGTTATGTCAGG < 1:1118466/50‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG < 1:842131/50‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:700635/49‑1 TGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT > 1:1683819/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG < 1:2844249/50‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG > 1:1371644/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT < 1:1629122/49‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:3770302/1‑50 AAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG > 1:2128458/1‑49 AAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG > 1:979301/1‑49 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGA < 1:3696471/49‑1 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGA < 1:2427849/49‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:4012815/50‑1 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT > NC_000913/3906599‑3906644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |