| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 48 [0] | [0] 46 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 46 (0.810) | 35/96 | 0.1 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT > NC_000913/3906550‑3906644 | aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:2371346‑M2/50‑50 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCg < 1:3576389‑M2/2‑1 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 1:3054276‑M2/46‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt < 1:921232‑M2/5‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTc < 1:1915858‑M2/7‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTc < 1:392817‑M2/7‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:2104386‑M2/10‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:2334135‑M2/41‑49 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:4164232‑M2/39‑50 (MQ=255) gtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:779122‑M2/38‑49 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:800033‑M2/14‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:2446617‑M2/14‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:2469637‑M2/14‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:2848264‑M2/14‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:1649616‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:310528‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:626861‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:2417200‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:279120‑M2/35‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:4259662‑M2/34‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc > 1:1069148‑M2/32‑50 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:3975253‑M2/20‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct > 1:2266209‑M2/31‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg < 1:1673542‑M2/22‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg < 1:1700090‑M2/21‑1 (MQ=255) agcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 1:667934‑M2/28‑50 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt < 1:2916004‑M2/23‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:1199868‑M2/25‑1 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt < 1:813769‑M2/26‑1 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt > 1:1480187‑M2/25‑50 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt > 1:1069231‑M2/25‑50 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:1201050‑M2/29‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:3868695‑M2/30‑1 (MQ=255) tcttgcgaggataagtgcCGGCTTCACCAGTATTCTCTGGTTATGTCAgg < 1:1118466‑M2/32‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 1:842131‑M2/32‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg < 1:700635‑M2/31‑1 (MQ=255) tgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt > 1:1683819‑M2/16‑50 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt < 1:1629122‑M2/36‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg < 1:2844249‑M2/37‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg > 1:1371644‑M2/14‑50 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc > 1:3770302‑M2/13‑50 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg > 1:2128458‑M2/7‑49 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg > 1:979301‑M2/7‑49 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGa < 1:3696471‑M2/44‑1 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGa < 1:2427849‑M2/44‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:4012815‑M2/46‑1 (MQ=255) | GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT > NC_000913/3906550‑3906644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |