| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 48 [0] | [0] 46 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 46 (0.810) | 35/96 | 0.1 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATA > NC_000913/3888382‑3888477 | aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:4342075‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:267564‑M1/1‑50 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:2371346‑M1/1‑49 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcg < 1:3576389‑M1/50‑3 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact < 1:921232‑M1/50‑6 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 1:3054276‑M1/1‑45 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacc < 1:2104386‑M1/50‑11 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 1:2334135‑M1/1‑40 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttc < 1:392817‑M1/47‑8 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttc < 1:1915858‑M1/47‑8 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:4164232‑M1/1‑38 (MQ=255) gtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:779122‑M1/1‑37 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:800033‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:2446617‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:2469637‑M1/50‑15 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:2848264‑M1/50‑15 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:279120‑M1/1‑34 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:310528‑M1/1‑34 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 1:626861‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:1649616‑M1/1‑34 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:2417200‑M1/1‑34 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc > 1:4259662‑M1/1‑33 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc > 1:1069148‑M1/1‑31 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct > 1:2266209‑M1/1‑30 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct < 1:3975253‑M1/50‑21 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg < 1:1673542‑M1/50‑23 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg < 1:1700090‑M1/49‑22 (MQ=255) aGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:667934‑M1/1‑27 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt < 1:2916004‑M1/49‑24 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtta < 1:1199868‑M1/50‑26 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:1480187‑M1/1‑24 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:1069231‑M1/1‑24 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat < 1:813769‑M1/50‑27 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtc < 1:1201050‑M1/50‑30 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 1:3868695‑M1/50‑31 (MQ=255) tCTTGCGAGGATAAGTGCcggcttcaccagtattctctggttatgtcagg < 1:1118466‑M1/50‑33 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcagg < 1:842131‑M1/50‑33 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag < 1:700635‑M1/49‑32 (MQ=255) tGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt > 1:1683819‑M1/1‑15 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttg < 1:2844249‑M1/50‑38 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttg > 1:1371644‑M1/1‑13 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt < 1:1629122‑M1/49‑37 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:3770302‑M1/1‑12 (MQ=255) aaGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcg > 1:2128458‑M1/1‑6 (MQ=255) aaGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcg > 1:979301‑M1/1‑6 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcga < 1:3696471‑M1/49‑45 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcga < 1:2427849‑M1/49‑45 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 1:4012815‑M1/50‑47 (MQ=255) | AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATA > NC_000913/3888382‑3888477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |