| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 167,484 | Δ5,964 bp | [fhuA]–fhuB | [fhuA], fhuC, fhuD, fhuB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 167484 | 173447 | 5964 | 64 [0] | [0] 65 | [fhuA]–fhuB | [fhuA],fhuC,fhuD,fhuB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 167483 | 0 (0.000) | 64 (1.100) | 48/98 | 0.0 | 100% | intergenic (+219/‑1) | mrcB/fhuA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | 173448 = | 0 (0.000) | intergenic (+4/+154) | fhuB/hemL | iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase | |||||
TAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATCG > NC_000913/167435‑167532 | tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt > 1:2326662‑M1/1‑49 (MQ=255) aaTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt > 1:4354446‑M1/1‑48 (MQ=255) aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc > 1:3303512‑M1/1‑47 (MQ=255) aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt < 1:518325‑M1/49‑3 (MQ=255) tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcc < 1:2427534‑M1/50‑5 (MQ=255) tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc > 1:416501‑M1/1‑46 (MQ=255) aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccat < 1:754369‑M1/50‑7 (MQ=255) aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca > 1:2256534‑M1/1‑44 (MQ=255) ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata < 1:4172418‑M1/50‑8 (MQ=255) ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata < 1:602018‑M1/50‑8 (MQ=255) tctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata > 1:1284605‑M1/1‑42 (MQ=255) ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat > 1:908936‑M1/1‑41 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac < 1:4258308‑M1/49‑12 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata < 1:2581213‑M1/47‑10 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata < 1:3878154‑M1/47‑10 (MQ=255) tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg < 1:2363588‑M1/50‑14 (MQ=255) tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg < 1:282205‑M1/50‑14 (MQ=255) ttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggc > 1:3545715‑M1/1‑36 (MQ=255) tACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggc < 1:1689121‑M1/49‑15 (MQ=255) cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct > 1:1771974‑M1/1‑33 (MQ=255) cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct > 1:172888‑M1/1‑33 (MQ=255) cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct > 1:2517136‑M1/1‑33 (MQ=255) cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct > 1:4350371‑M1/1‑33 (MQ=255) cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct < 1:2587017‑M1/50‑18 (MQ=255) cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct < 1:2808297‑M1/50‑18 (MQ=255) gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggctctg > 1:780816‑M1/1‑32 (MQ=255) ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgt < 1:2963731‑M1/50‑20 (MQ=255) aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac > 1:2758392‑M1/1‑29 (MQ=255) aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta < 1:1371678‑M1/49‑21 (MQ=255) aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta < 1:2531060‑M1/49‑21 (MQ=255) cATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc > 1:983164‑M1/1‑27 (MQ=255) ttCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcct > 1:2542078‑M1/1‑25 (MQ=255) ttCACTTTACATCAGAGATATACCAttccatacaacggccctgtacgcct < 1:3230889‑M1/50‑26 (MQ=255) cACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg < 1:1020898‑M1/49‑27 (MQ=255) cACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg > 1:3704520‑M1/1‑23 (MQ=255) aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga > 1:2308068‑M1/1‑22 (MQ=255) aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga > 1:3995312‑M1/1‑22 (MQ=255) aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga > 1:3632921‑M1/1‑22 (MQ=255) aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga > 1:1617847‑M1/1‑22 (MQ=255) aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga > 1:3264027‑M1/1‑22 (MQ=255) aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga > 1:3013906‑M1/1‑22 (MQ=255) cTTTACATCAGAGATATACCAttccatataacggccctgtacgcctggac < 1:1540443‑M1/50‑30 (MQ=255) tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg > 1:4214041‑M1/1‑20 (MQ=255) tACATCAGAGATATACCAttccatataacggccctgtacgcctggacgga > 1:3219914‑M1/1‑18 (MQ=255) tACATCAGAGATATACCAttccatataacggccctgtacgcctggacg < 1:640433‑M1/48‑31 (MQ=255) cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat < 1:1458291‑M1/49‑34 (MQ=255) aTCAGAGATATACCAttccatataacggccctgtacgcctggacggata > 1:3632277‑M1/1‑15 (MQ=255) aTCAGAGATATACCAttccatataacggccctgtacgcctggacggata > 1:2615974‑M1/1‑15 (MQ=255) agagATATACCAttccatataacggccctgtacgcctggacggataaagc > 1:2629194‑M1/1‑12 (MQ=255) agaTATACCAttccatataacggccctgtacgcctggacggataaagcgt > 1:3425758‑M1/1‑10 (MQ=255) gaTATACCAttccatataacggccctgtacgcctggacggataaagcgtt > 1:2914531‑M1/1‑9 (MQ=255) gaTATACCAttccatataacggccctgtacgcctggacggataaagcgtt < 1:1462112‑M1/50‑42 (MQ=255) atatACCAttccatataacggccctgtacgcctggacggataaagcgttt < 1:2118341‑M1/50‑43 (MQ=255) atatACCAttccatataacggccctgtacgcctggacggataaagcgttt < 1:1309924‑M1/50‑43 (MQ=255) atatACCAttccatataacggccctgtacgcctggacggataaagcgtt > 1:3308765‑M1/1‑8 (MQ=255) atatACCAttccatataacggccctgtacgcctggacggataaagcgtt > 1:2450591‑M1/1‑8 (MQ=255) ataCCAttccatataacggccctgtacgcctggacggataaagcgtttac > 1:249053‑M1/1‑6 (MQ=255) taCCAttccatataacggccctgtacgcctggacggataaagcgtttac < 1:3332571‑M1/49‑45 (MQ=255) ccAttccatataacggccctgtacgcctggacggataaagcgtttacgc < 1:3525574‑M1/49‑47 (MQ=255) ccAttccatataacggccctgtacgcctggacggataaagcgtttacgc > 1:3404279‑M1/1‑3 (MQ=255) cAttccatataacggccctgtacgcctggacggataaagcgtttacgcga < 1:4312295‑M1/50‑49 (MQ=255) cAttccatataacggccctgtacgcctggacggataaagcgtttacgcga > 1:1716493‑M1/1‑2 (MQ=255) attccatataacggccctgtacgcctggacggataaagcgtttacgcgac < 1:1239746‑M1/50‑50 (MQ=255) attccatataacggccctgtacgcctggacggataaagcgtttacgcga > 1:1595134‑M1/1‑1 (MQ=255) | TAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATCG > NC_000913/167435‑167532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |