| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 167,484 | Δ5,964 bp | [fhuA]–fhuB | [fhuA], fhuC, fhuD, fhuB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 167484 | 173447 | 5964 | 64 [0] | [0] 65 | [fhuA]–fhuB | [fhuA],fhuC,fhuD,fhuB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 167483 | 0 (0.000) | 64 (1.100) | 48/98 | 0.0 | 100% | intergenic (+219/‑1) | mrcB/fhuA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | 173448 = | 0 (0.000) | intergenic (+4/+154) | fhuB/hemL | iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase | |||||
CGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACA > NC_000913/173399‑173497 | taatcattctcgtttacgttatcattcactttacatcagagatataccat > 1:2326662‑M2/50‑50 (MQ=255) aatcattctcgtttacgttatcattcactttacatcagagatataccatt > 1:4354446‑M2/49‑50 (MQ=255) atcattctcgtttacgttatcattcactttacatcagagatataccatt < 1:518325‑M2/2‑1 (MQ=255) atcattctcgtttacgttatcattcactttacatcagagatataccaTTc > 1:3303512‑M2/48‑50 (MQ=255) tcattctcgtttacgttatcattcactttacatcagagatataccaTTcc < 1:2427534‑M2/4‑1 (MQ=255) tcattctcgtttacgttatcattcactttacatcagagatataccaTTc > 1:416501‑M2/47‑49 (MQ=255) attctcgtttacgttatcattcactttacatcagagatataccaTTCCat < 1:754369‑M2/6‑1 (MQ=255) attctcgtttacgttatcattcactttacatcagagatataccaTTCCa > 1:2256534‑M2/45‑49 (MQ=255) ttctcgtttacgttatcattcactttacatcagagatataccaTTCCata < 1:4172418‑M2/7‑1 (MQ=255) ttctcgtttacgttatcattcactttacatcagagatataccaTTCCata < 1:602018‑M2/7‑1 (MQ=255) tctcgtttacgttatcattcactttacatcagagatataccaTTCCata > 1:1284605‑M2/43‑49 (MQ=255) ctcgtttacgttatcattcactttacatcagagatataccaTTCCatat > 1:908936‑M2/42‑49 (MQ=255) gtttacgttatcattcactttacatcagagatataccaTTCCAtata < 1:2581213‑M2/9‑1 (MQ=255) gtttacgttatcattcactttacatcagagatataccaTTCCAtata < 1:3878154‑M2/9‑1 (MQ=255) gtttacgttatcattcactttacatcagagatataccaTTCCATATAAc < 1:4258308‑M2/11‑1 (MQ=255) tttacgttatcattcactttacatcagagatataccaTTCCATATAACgg < 1:282205‑M2/13‑1 (MQ=255) tttacgttatcattcactttacatcagagatataccaTTCCATATAACgg < 1:2363588‑M2/13‑1 (MQ=255) ttacgttatcattcactttacatcagagatataccaTTCCATATAACGGc > 1:3545715‑M2/37‑50 (MQ=255) tacgttatcattcactttacatcagagatataccaTTCCATATAACGGc < 1:1689121‑M2/14‑1 (MQ=255) cgttatcattcactttacatcagagatataccaTTCCATATAACGGCCCt > 1:2517136‑M2/34‑50 (MQ=255) cgttatcattcactttacatcagagatataccaTTCCATATAACGGCCCt < 1:2808297‑M2/17‑1 (MQ=255) cgttatcattcactttacatcagagatataccaTTCCATATAACGGCCCt < 1:2587017‑M2/17‑1 (MQ=255) cgttatcattcactttacatcagagatataccaTTCCATATAACGGCCCt > 1:4350371‑M2/34‑50 (MQ=255) cgttatcattcactttacatcagagatataccaTTCCATATAACGGCCCt > 1:1771974‑M2/34‑50 (MQ=255) cgttatcattcactttacatcagagatataccaTTCCATATAACGGCCCt > 1:172888‑M2/34‑50 (MQ=255) gttatcattcactttacatcagagatataccaTTCCATATAACGGCTCTg > 1:780816‑M2/33‑50 (MQ=255) ttatcattcactttacatcagagatataccaTTCCATATAACGGCCCTGt < 1:2963731‑M2/19‑1 (MQ=255) atcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTa < 1:2531060‑M2/20‑1 (MQ=255) atcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTa < 1:1371678‑M2/20‑1 (MQ=255) atcattcactttacatcagagatataccaTTCCATATAACGGCCCTGTAc > 1:2758392‑M2/30‑50 (MQ=255) cattcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGc > 1:983164‑M2/28‑50 (MQ=255) ttcactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCt > 1:2542078‑M2/26‑50 (MQ=255) ttcactttacatcagagatataccaTTCCATACAACGGCCCTGTACGCCt < 1:3230889‑M2/25‑1 (MQ=255) cactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTg < 1:1020898‑M2/26‑1 (MQ=255) cactttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTg > 1:3704520‑M2/24‑49 (MQ=255) actttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGa > 1:2308068‑M2/23‑50 (MQ=255) actttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGa > 1:3995312‑M2/23‑50 (MQ=255) actttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGa > 1:3632921‑M2/23‑50 (MQ=255) actttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGa > 1:1617847‑M2/23‑50 (MQ=255) actttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGa > 1:3264027‑M2/23‑50 (MQ=255) actttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGa > 1:3013906‑M2/23‑50 (MQ=255) ctttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGAc < 1:1540443‑M2/29‑1 (MQ=255) tttacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACg > 1:4214041‑M2/21‑50 (MQ=255) tacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACg < 1:640433‑M2/30‑1 (MQ=255) tacatcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGa > 1:3219914‑M2/19‑50 (MQ=255) catcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGAt < 1:1458291‑M2/33‑1 (MQ=255) atcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATa > 1:3632277‑M2/16‑49 (MQ=255) atcagagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATa > 1:2615974‑M2/16‑49 (MQ=255) agagatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGc > 1:2629194‑M2/13‑50 (MQ=255) agatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGt > 1:3425758‑M2/11‑50 (MQ=255) gatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGtt > 1:2914531‑M2/10‑50 (MQ=255) gatataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGtt < 1:1462112‑M2/41‑1 (MQ=255) atataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGttt < 1:2118341‑M2/42‑1 (MQ=255) atataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGttt < 1:1309924‑M2/42‑1 (MQ=255) atataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGtt > 1:3308765‑M2/9‑49 (MQ=255) atataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGtt > 1:2450591‑M2/9‑49 (MQ=255) ataccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAc > 1:249053‑M2/7‑50 (MQ=255) taccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAc < 1:3332571‑M2/44‑1 (MQ=255) ccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAcgc < 1:3525574‑M2/46‑1 (MQ=255) ccaTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTAcgc > 1:3404279‑M2/4‑49 (MQ=255) caTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGa < 1:4312295‑M2/48‑1 (MQ=255) caTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGa > 1:1716493‑M2/3‑50 (MQ=255) aTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGa > 1:1595134‑M2/2‑49 (MQ=255) aTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGAc < 1:1239746‑M2/49‑1 (MQ=255) ttCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACa < 1:857679/50‑1 (MQ=255) | CGGCGCGCCATATTTTATCTATTTGTTGAGAAAGCAGAGCCGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACA > NC_000913/173399‑173497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |