| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 42 (0.940) +CGAGATGGACG |
25/76 | 0.2 | 64.5% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 624576 = | 60 (1.040) | intergenic (‑66/‑309) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC | |||||
AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCCCG > NC_000913/380064‑380159 | aGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:844779‑M1/1‑48 (MQ=255) ggAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcga < 1:1373543‑M1/50‑4 (MQ=255) ggAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:4105489‑M1/1‑47 (MQ=255) gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgag < 1:1362550‑M1/50‑5 (MQ=255) gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgag < 1:1405189‑M1/50‑5 (MQ=255) aaTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgaga < 1:1462890‑M1/50‑6 (MQ=255) aTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagat < 1:3739179‑M1/50‑7 (MQ=255) aTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagat > 1:236108‑M1/1‑44 (MQ=255) tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg > 1:3130207‑M1/1‑43 (MQ=255) tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg < 1:1534281‑M1/50‑8 (MQ=255) cAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg > 1:1326791‑M1/1‑42 (MQ=255) aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg < 1:3925954‑M1/49‑9 (MQ=255) aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg > 1:1751499‑M1/1‑38 (MQ=255) tttCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggt < 1:3441216‑M1/50‑14 (MQ=255) ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc > 1:523399‑M1/1‑34 (MQ=255) ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc > 1:958720‑M1/1‑34 (MQ=255) cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc > 1:1815789‑M1/1‑33 (MQ=255) cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc < 1:2006986‑M1/49‑17 (MQ=255) aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct > 1:4038488‑M1/1‑32 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:1886505‑M1/50‑20 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:4360505‑M1/50‑20 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:2847042‑M1/50‑20 (MQ=255) tCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgc > 1:508209‑M1/1‑29 (MQ=255) aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc < 1:134034‑M1/50‑24 (MQ=255) cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct > 1:3900561‑M1/1‑24 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt > 1:933435‑M1/1‑23 (MQ=255) gCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgg > 1:355722‑M1/1‑21 (MQ=255) gCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgg > 1:3148003‑M1/1‑21 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:99981‑M1/1‑20 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg < 1:2706045‑M1/50‑31 (MQ=255) cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga < 1:3004847‑M1/49‑33 (MQ=255) aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga > 1:2969948‑M1/1‑16 (MQ=255) aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga > 1:3210264‑M1/1‑16 (MQ=255) aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga > 1:2955058‑M1/1‑16 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag < 1:1686071‑M1/50‑36 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag < 1:1944157‑M1/50‑36 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag < 1:1382644‑M1/50‑36 (MQ=255) ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg > 1:93735‑M1/1‑13 (MQ=255) ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg > 1:2746657‑M1/1‑13 (MQ=255) ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg > 1:2481175‑M1/1‑13 (MQ=255) gCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt < 1:161675‑M1/49‑39 (MQ=255) cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt > 1:2383063‑M1/1‑10 (MQ=255) aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggttag > 1:3044611‑M1/1‑9 (MQ=255) gACCGTTAcgagattgacggtcccctcgcccccttggggagagggttagg > 1:3436646‑M1/1‑8 (MQ=255) gACCGTTAcgagatggacggtcccctcgcccccttggggagagggttagg > 1:1988357‑M1/1‑8 (MQ=255) gACCGTTAcgagatggacggtcccctcgcccccttggggagagggttagg > 1:448073‑M1/1‑8 (MQ=255) gACCGTTAcgagatggacggtcccctcgcccccttggggagagggttagg > 1:996739‑M1/1‑8 (MQ=255) aCCGTTAcgagatggacggtcccctcgcccccttggggagagggttaggg < 1:1729967‑M1/50‑44 (MQ=255) cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg < 1:201179‑M1/50‑46 (MQ=255) cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg < 1:1570815‑M1/50‑46 (MQ=255) cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt > 1:106873‑M1/1‑5 (MQ=255) gTTAcgagatggacggtcccctcgcccccttggggagagggttagggtga < 1:4021692‑M1/50‑47 (MQ=255) gTTAcgagatggacggtcccctcgcccccttggggagagggttagggtga < 1:3290864‑M1/50‑47 (MQ=255) acgagatggacggtcccctcgcccccttggggagagggttagggtgagg < 1:3013144‑M1/49‑49 (MQ=255) | AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCCCG > NC_000913/380064‑380159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |