| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 42 (0.940) +CGAGATGGACG |
25/76 | 0.2 | 64.5% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 624576 = | 60 (1.040) | intergenic (‑66/‑309) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC | |||||
Only 100 of 106 total aligned reads displayed.
ATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCA > NC_000913/624527‑624625 | atttccaggtcagacgggctgcaagttgcagaccgttacgagatggacgg > 1:1751499‑M2/50‑50 (MQ=255) tttccaggtcagacgggctgcaagttgcagaccgttacgagatggacgGt < 1:3441216‑M2/2‑1 (MQ=255) ttaATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCg < 1:1389667/49‑1 (MQ=255) ttaATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGt > 1:3510237/1‑50 (MQ=255) ttaATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGt > 1:1747100/1‑50 (MQ=255) taataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTc > 1:3550404/1‑50 (MQ=255) taataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTc > 1:4104501/1‑50 (MQ=255) taataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTc > 1:251286/1‑50 (MQ=255) aataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcc > 1:1056324/1‑50 (MQ=255) aataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcc > 1:432459/1‑50 (MQ=255) ccaggtcagacgggctgcaagttgcagaccgttacgagatggacgGTccc > 1:958720‑M2/46‑50 (MQ=255) ccaggtcagacgggctgcaagttgcagaccgttacgagatggacgGTccc > 1:523399‑M2/46‑50 (MQ=255) ataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTccc > 1:3992428/1‑50 (MQ=255) ataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcc < 1:4072560/49‑1 (MQ=255) taaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcccc > 1:2488112/1‑50 (MQ=255) caggtcagacgggctgcaagttgcagaccgttacgagatggacgGTcccc > 1:1815789‑M2/45‑50 (MQ=255) caggtcagacgggctgcaagttgcagaccgttacgagatggacgGTccc < 1:2006986‑M2/5‑1 (MQ=255) aggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCt > 1:4038488‑M2/44‑50 (MQ=255) aaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCt > 1:3606126/1‑50 (MQ=255) aaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCt > 1:219950/1‑50 (MQ=255) ggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTc < 1:2847042‑M2/8‑1 (MQ=255) ggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTc < 1:1886505‑M2/8‑1 (MQ=255) ggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTc < 1:4360505‑M2/8‑1 (MQ=255) aGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTc > 1:4207786/1‑50 (MQ=255) aGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTc > 1:1383711/1‑50 (MQ=255) ggTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCg > 1:2467754/1‑50 (MQ=255) ggTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCg < 1:2900874/50‑1 (MQ=255) tcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGc > 1:508209‑M2/41‑50 (MQ=255) gTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGc > 1:1641873/1‑50 (MQ=255) ttAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGcc > 1:706066/1‑50 (MQ=255) tAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGccc > 1:3113438/1‑50 (MQ=255) tAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGccc > 1:4246004/1‑50 (MQ=255) tAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGccc > 1:1732490/1‑50 (MQ=255) agacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGccc < 1:134034‑M2/12‑1 (MQ=255) aaGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGcccc > 1:1628624/1‑50 (MQ=255) gggCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCtt > 1:1409326/1‑50 (MQ=255) cgggctgcaagttgcagaccgttacgagatggacgGTCCCCTcgccccct > 1:3900561‑M2/36‑48 (MQ=255) gggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCctt > 1:933435‑M2/35‑50 (MQ=255) gCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTg < 1:1904402/50‑1 (MQ=255) gctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTgg > 1:355722‑M2/33‑50 (MQ=255) gctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTgg > 1:3148003‑M2/33‑50 (MQ=255) cGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTgg < 1:172929/50‑1 (MQ=255) gTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg > 1:3545119/1‑50 (MQ=255) ctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTggg < 1:2706045‑M2/19‑1 (MQ=255) tAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTgggg < 1:2400097/50‑1 (MQ=255) caagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGga < 1:3004847‑M2/21‑1 (MQ=255) aTGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg > 1:2534671/1‑47 (MQ=255) aagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGga > 1:3210264‑M2/28‑48 (MQ=255) aagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGga > 1:2955058‑M2/28‑48 (MQ=255) aagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGga > 1:2969948‑M2/28‑48 (MQ=255) gACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGagag > 1:623956/1‑50 (MQ=255) agttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGagag < 1:1944157‑M2/24‑1 (MQ=255) agttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGagag < 1:1382644‑M2/24‑1 (MQ=255) aCAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAgg > 1:290592/1‑50 (MQ=255) ttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAggg > 1:2481175‑M2/25‑50 (MQ=255) ttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAggg > 1:93735‑M2/25‑50 (MQ=255) ttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAggg > 1:2746657‑M2/25‑50 (MQ=255) cAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAggg > 1:1621947/1‑50 (MQ=255) aaaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:478499/1‑50 (MQ=255) aaaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:172039/1‑50 (MQ=255) gcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGt < 1:161675‑M2/27‑1 (MQ=255) cagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGt > 1:2383063‑M2/22‑48 (MQ=255) aTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt > 1:1550934/1‑48 (MQ=255) agaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAg > 1:3044611‑M2/21‑50 (MQ=255) gaccgttacgagattgacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAgg > 1:3436646‑M2/20‑50 (MQ=255) gaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAgg > 1:448073‑M2/20‑50 (MQ=255) gaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAgg > 1:996739‑M2/20‑50 (MQ=255) gaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAgg > 1:1988357‑M2/20‑50 (MQ=255) cGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg > 1:1686414/1‑50 (MQ=255) cGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg < 1:4204429/49‑1 (MQ=255) cGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAgg < 1:1321720/49‑1 (MQ=255) accgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAggg < 1:1729967‑M2/32‑1 (MQ=255) gACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt > 1:207075/1‑50 (MQ=255) cgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt > 1:106873‑M2/17‑49 (MQ=255) cgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTg < 1:1570815‑M2/34‑1 (MQ=255) cgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTg < 1:201179‑M2/34‑1 (MQ=255) gttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGa < 1:3290864‑M2/35‑1 (MQ=255) gttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGa < 1:4021692‑M2/35‑1 (MQ=255) cAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGCGGGATAGGGTgc > 1:1778069/1‑49 (MQ=18) cAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt > 1:3712634/1‑48 (MQ=255) cAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt > 1:945468/1‑48 (MQ=255) aaaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGat > 1:40674/1‑49 (MQ=255) aaaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAg < 1:4035954/50‑1 (MQ=255) aaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAgg > 1:78157/1‑50 (MQ=255) aaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAgg < 1:3374940/50‑1 (MQ=255) aaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAgg < 1:1261574/50‑1 (MQ=255) acgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAgg < 1:3013144‑M2/37‑1 (MQ=255) aGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAggg > 1:2605628/1‑50 (MQ=255) aGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAggg > 1:2782963/1‑50 (MQ=255) cgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAgggg < 1:2782246‑M2/39‑1 (MQ=255) cgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAggg < 1:1649660‑M2/38‑1 (MQ=255) gcACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGaa > 1:3707241/1‑50 (MQ=255) acaATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGaa > 1:3989751/1‑48 (MQ=255) acaATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAca < 1:3340481/50‑1 (MQ=255) caATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcag > 1:2251372/1‑50 (MQ=255) aaTCCGTCCCCTCGCCCCTTTGGGGCGAGGGTTAGGGTGAGGGGAAcagc > 1:4042617/1‑50 (MQ=255) aaTCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcagc > 1:752196/1‑50 (MQ=255) cGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcagccag > 1:128049/1‑49 (MQ=255) gTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCa > 1:991631/1‑50 (MQ=255) gTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCa > 1:3302913/1‑50 (MQ=255) | ATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGCCAGCA > NC_000913/624527‑624625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |