Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,756,160 Δ35,091 bp [intA]–[lhgO] 33 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2756160 2791250 35091 39 [0] [0] 39 [intA]–[lhgO] [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 27561590 (0.000)37 (0.480) 23/96 0.9 100% coding (1/1242 nt) intA CP4‑57 prophage; integrase
?NC_000913 2791251 = 0 (0.000)intergenic (+1/‑22) lhgO/gabD L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase

AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2756109‑2756159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  >  NC_000913/2791251‑2791299
                                                                                                    
AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA                                                   <  1:1275569/50‑1
 ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC                                                  <  1:2043793/50‑1
   GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT                                                <  1:463649/50‑1
     AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT                                              <  1:1948158/50‑1
      AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG                                             <  1:3144922/50‑1
       AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA                                            <  1:1912124/50‑1
        GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA                                           <  1:2843086/50‑1
        GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA                                           <  1:2138591/50‑1
              TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG                                      <  1:4146227/49‑1
              TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG                                      <  1:1633771/49‑1
                 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT                                   <  1:5586390/49‑1
                 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT                                   <  1:5302527/49‑1
                   TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT                                 <  1:320780/49‑1
                    ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA                                <  1:247029/49‑1
                    ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA                                <  1:1698181/49‑1
                    ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA                                <  1:1636020/49‑1
                    ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA                                <  1:4194364/49‑1
                     CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC                              <  1:5351138/50‑1
                      GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC                              >  1:5690871/1‑49
                           ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA                         <  1:317766/48‑1
                           ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATG                          <  1:2379174/47‑1
                           ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATG                          <  1:1462038/47‑1
                            gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA                        <  1:859155/49‑1
                            gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA                        <  1:2506883/49‑1
                                AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT                     <  1:297013/49‑1
                                AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC                      <  1:4019494/48‑1
                                 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA                   <  1:4667078/50‑1
                                   GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC                 <  1:5514878/50‑1
                                   GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC                 <  1:1595385/50‑1
                                     AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA               <  1:2122220/50‑1
                                        GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG            <  1:3724879/50‑1
                                         AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT           <  1:3105705/50‑1
                                          GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTA          <  1:4116232/50‑1
                                            CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC        <  1:2214376/50‑1
                                            CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAC        <  1:561443/50‑1
                                               CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT      <  1:2769537/49‑1
                                                 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT   <  1:3768977/50‑1
                                                 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT   <  1:1598903/50‑1
                                                  ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  <  1:573633/50‑1
                                                                                                    
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2756109‑2756159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  >  NC_000913/2791251‑2791299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.