| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 39 [0] | [0] 39 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 37 (0.480) | 23/96 | 0.9 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
GCGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTCC > NC_000913/2791202‑2791300 | acgaaaagctctattgtttacgttgggctaaacgcagggagactccccac < 1:2043793‑M2/1‑1 (MQ=255) gaaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt < 1:463649‑M2/3‑1 (MQ=255) aaagctctattgtttacgttgggctaaacgcagggagactccccaCCttt < 1:1948158‑M2/5‑1 (MQ=255) aagctctattgtttacgttgggctaaacgcagggagactccccaCCTTTg < 1:3144922‑M2/6‑1 (MQ=255) agctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGa < 1:1912124‑M2/7‑1 (MQ=255) gctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa < 1:2843086‑M2/8‑1 (MQ=255) gctctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa < 1:2138591‑M2/8‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg < 1:4146227‑M2/13‑1 (MQ=255) ttgtttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAg < 1:1633771‑M2/13‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 1:5302527‑M2/16‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 1:5586390‑M2/16‑1 (MQ=255) tacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGt < 1:320780‑M2/18‑1 (MQ=255) acgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTa < 1:1698181‑M2/19‑1 (MQ=255) acgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTa < 1:247029‑M2/19‑1 (MQ=255) acgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTa < 1:1636020‑M2/19‑1 (MQ=255) acgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTa < 1:4194364‑M2/19‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc < 1:5351138‑M2/21‑1 (MQ=255) gttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGc > 1:5690871‑M2/29‑49 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATg < 1:1462038‑M2/25‑1 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATg < 1:2379174‑M2/25‑1 (MQ=255) ggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGa < 1:317766‑M2/26‑1 (MQ=255) gctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaa < 1:2506883‑M2/27‑1 (MQ=255) gctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGaa < 1:859155‑M2/27‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAAc < 1:4019494‑M2/29‑1 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt < 1:297013‑M2/30‑1 (MQ=255) acgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTa < 1:4667078‑M2/32‑1 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc < 1:5514878‑M2/34‑1 (MQ=255) gcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAAc < 1:1595385‑M2/34‑1 (MQ=255) agggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGa < 1:2122220‑M2/36‑1 (MQ=255) gagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg < 1:3724879‑M2/39‑1 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGt < 1:3105705‑M2/40‑1 (MQ=255) gactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTa < 1:4116232‑M2/41‑1 (MQ=255) ctccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAc < 1:2214376‑M2/43‑1 (MQ=255) ctccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAAc < 1:561443‑M2/43‑1 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACtt < 1:2769537‑M2/45‑1 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt < 1:3768977‑M2/48‑1 (MQ=255) caCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAtt < 1:1598903‑M2/48‑1 (MQ=255) aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTc < 1:573633‑M2/49‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTcc < 1:2749896/50‑1 (MQ=255) | GCGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTCC > NC_000913/2791202‑2791300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |