| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 39 [0] | [0] 39 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 37 (0.480) | 23/96 | 0.9 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 | aaCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:1275569‑M1/50‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:2043793‑M1/50‑2 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:463649‑M1/50‑4 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:1948158‑M1/50‑6 (MQ=255) aaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:3144922‑M1/50‑7 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:1912124‑M1/50‑8 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:2843086‑M1/50‑9 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:2138591‑M1/50‑9 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:4146227‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:1633771‑M1/49‑14 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:5586390‑M1/49‑17 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:5302527‑M1/49‑17 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 1:320780‑M1/49‑19 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:247029‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:1698181‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:1636020‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:4194364‑M1/49‑20 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:5351138‑M1/50‑22 (MQ=255) gTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:5690871‑M1/1‑28 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:317766‑M1/48‑27 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:2379174‑M1/47‑26 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatg < 1:1462038‑M1/47‑26 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:859155‑M1/49‑28 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:2506883‑M1/49‑28 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact < 1:297013‑M1/49‑31 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:4019494‑M1/48‑30 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:4667078‑M1/50‑33 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:5514878‑M1/50‑35 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaac < 1:1595385‑M1/50‑35 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga < 1:2122220‑M1/50‑37 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag < 1:3724879‑M1/50‑40 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt < 1:3105705‑M1/50‑41 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagta < 1:4116232‑M1/50‑42 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:2214376‑M1/50‑44 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaac < 1:561443‑M1/50‑44 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:2769537‑M1/49‑46 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:3768977‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:1598903‑M1/50‑49 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:573633‑M1/50‑50 (MQ=255) | AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756109‑2756208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |