| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 77 [0] | [0] 75 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 63 (0.950) | 49/82 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
CATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCG > NC_000913/2558649‑2558747 | cATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG > 1:5808133‑M1/1‑50 (MQ=255) aTTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGg < 1:4108756‑M1/50‑2 (MQ=255) aTTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG > 1:4980379‑M1/1‑49 (MQ=255) aTTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG > 1:1433588‑M1/1‑49 (MQ=255) ttGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGg > 1:958506‑M1/1‑48 (MQ=255) gCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaa < 1:3603634‑M1/49‑4 (MQ=255) cGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatg > 1:4690223‑M1/1‑44 (MQ=255) cGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatg < 1:4682121‑M1/50‑7 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc < 1:5054598‑M1/50‑8 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc < 1:2276‑M1/50‑8 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:415989‑M1/1‑43 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:393737‑M1/1‑43 (MQ=255) aaCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:3046309‑M1/1‑42 (MQ=255) aaCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:3551289‑M1/1‑42 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcga < 1:1005955‑M1/50‑10 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:109816‑M1/1‑41 (MQ=255) cAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgag > 1:180020‑M1/1‑40 (MQ=255) aaTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt > 1:807446‑M1/1‑39 (MQ=255) aaTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt > 1:1083924‑M1/1‑39 (MQ=255) aaTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt < 1:2473033‑M1/50‑12 (MQ=255) aTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtg < 1:3057417‑M1/50‑13 (MQ=255) tgtgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtga > 1:1829197‑M1/1‑37 (MQ=255) gtgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgat > 1:2273441‑M1/1‑36 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatt > 1:1545931‑M1/1‑35 (MQ=255) ggTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt > 1:896514‑M1/1‑34 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttc < 1:1164755‑M1/50‑18 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt > 1:5768149‑M1/1‑33 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt < 1:5682776‑M1/49‑17 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt > 1:962278‑M1/1‑33 (MQ=255) tCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttca < 1:2223458‑M1/50‑19 (MQ=255) tCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttca < 1:3856642‑M1/50‑19 (MQ=255) tCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttca > 1:1050934‑M1/1‑32 (MQ=255) cTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcac > 1:1674844‑M1/1‑31 (MQ=255) tttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc > 1:2087054‑M1/1‑30 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgt > 1:359631‑M1/1‑28 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccg < 1:3437415‑M1/49‑22 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc < 1:5974393‑M1/48‑21 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc < 1:750168‑M1/48‑21 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc < 1:159888‑M1/48‑21 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcac < 1:810492‑M1/47‑20 (MQ=255) aGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgt < 1:3395078‑M1/49‑23 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca < 1:5896324‑M1/50‑25 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca < 1:2716893‑M1/50‑25 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtc < 1:180098‑M1/49‑24 (MQ=255) tttCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcac > 1:4307704‑M1/1‑25 (MQ=255) ttCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc > 1:1249130‑M1/1‑24 (MQ=255) ttCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc > 1:3160671‑M1/1‑24 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc < 1:4236663‑M1/49‑27 (MQ=255) cATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccgg > 1:1106712‑M1/1‑22 (MQ=255) cATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccg < 1:265654‑M1/49‑28 (MQ=255) cATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccg < 1:605479‑M1/49‑28 (MQ=255) aTAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccgg > 1:1050302‑M1/1‑21 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcaca < 1:3848056‑M1/50‑33 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcaca < 1:3819691‑M1/50‑33 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcac > 1:4534120‑M1/1‑18 (MQ=255) gTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaa < 1:2863707‑M1/50‑34 (MQ=255) gTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaa > 1:4375577‑M1/1‑17 (MQ=255) gTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaa > 1:4868972‑M1/1‑17 (MQ=255) tCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaac > 1:5035680‑M1/1‑16 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc > 1:2526042‑M1/1‑14 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc < 1:2700191‑M1/49‑36 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc < 1:2106426‑M1/49‑36 (MQ=255) ttCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccga > 1:1025346‑M1/1‑13 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatc > 1:3017490‑M1/1‑11 (MQ=255) ccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatcc < 1:1289520‑M1/50‑41 (MQ=255) cTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccg > 1:2343675‑M1/1‑9 (MQ=255) tCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc > 1:4857057‑M1/1‑8 (MQ=255) tCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc > 1:314998‑M1/1‑8 (MQ=255) tCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc > 1:3391896‑M1/1‑8 (MQ=255) cAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc > 1:4283915‑M1/1‑7 (MQ=255) aggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgcc > 1:5643257‑M1/1‑6 (MQ=255) ggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgcca > 1:5765436‑M1/1‑5 (MQ=255) aaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa > 1:2139227‑M1/1‑3 (MQ=255) aggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaaaa < 1:5566202‑M1/50‑49 (MQ=255) aggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa > 1:2649683‑M1/1‑2 (MQ=255) ggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaaaag < 1:1805574‑M1/50‑50 (MQ=255) ggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa > 1:5954864‑M1/1‑1 (MQ=255) | CATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCG > NC_000913/2558649‑2558747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |