| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 77 [0] | [0] 75 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 63 (0.950) | 49/82 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
AGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAG > NC_000913/2565440‑2565537 | attgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagg < 1:4108756‑M2/1‑1 (MQ=255) ttgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagg > 1:958506‑M2/49‑49 (MQ=255) gccgaacaatgtggtctttagtttcataagtcgttccctcaggaaggaa < 1:3603634‑M2/3‑1 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg > 1:4690223‑M2/45‑50 (MQ=255) cgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATg < 1:4682121‑M2/6‑1 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc < 1:2276‑M2/7‑1 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc < 1:5054598‑M2/7‑1 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:415989‑M2/44‑50 (MQ=255) gaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:393737‑M2/44‑50 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:3046309‑M2/43‑49 (MQ=255) aacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:3551289‑M2/43‑49 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGc > 1:109816‑M2/42‑48 (MQ=255) acaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGa < 1:1005955‑M2/9‑1 (MQ=255) caatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAg > 1:180020‑M2/41‑50 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt > 1:807446‑M2/40‑50 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt > 1:1083924‑M2/40‑50 (MQ=255) aatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGt < 1:2473033‑M2/11‑1 (MQ=255) atgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTg < 1:3057417‑M2/12‑1 (MQ=255) tgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGa > 1:1829197‑M2/38‑50 (MQ=255) gtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAt > 1:2273441‑M2/37‑50 (MQ=255) tggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAtt > 1:1545931‑M2/36‑50 (MQ=255) ggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:896514‑M2/35‑50 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt < 1:5682776‑M2/16‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:5768149‑M2/34‑49 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:962278‑M2/34‑49 (MQ=255) gtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtc < 1:1164755‑M2/17‑1 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca < 1:2223458‑M2/18‑1 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca < 1:3856642‑M2/18‑1 (MQ=255) tctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtca > 1:1050934‑M2/33‑50 (MQ=255) ctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac > 1:1674844‑M2/32‑50 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc > 1:2087054‑M2/31‑50 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt > 1:359631‑M2/29‑50 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccg < 1:3437415‑M2/21‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc < 1:5974393‑M2/20‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc < 1:750168‑M2/20‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcacc < 1:159888‑M2/20‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcac < 1:810492‑M2/19‑1 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgt < 1:3395078‑M2/22‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca < 1:2716893‑M2/24‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtca < 1:5896324‑M2/24‑1 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtc < 1:180098‑M2/23‑1 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcac > 1:4307704‑M2/26‑50 (MQ=255) ttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc > 1:3160671‑M2/25‑50 (MQ=255) ttcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc > 1:1249130‑M2/25‑50 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcacc < 1:4236663‑M2/26‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcaccg < 1:265654‑M2/27‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTtcaccgtcaccg < 1:605479‑M2/27‑1 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 1:1106712‑M2/23‑50 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCgg > 1:1050302‑M2/22‑49 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcaca < 1:3819691‑M2/32‑1 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcaca < 1:3848056‑M2/32‑1 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 1:4534120‑M2/19‑49 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa > 1:4868972‑M2/18‑50 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa < 1:2863707‑M2/33‑1 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACaa > 1:4375577‑M2/18‑50 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAc > 1:5035680‑M2/17‑50 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc > 1:2526042‑M2/15‑49 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc < 1:2700191‑M2/35‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAcc < 1:2106426‑M2/35‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGa > 1:1025346‑M2/14‑50 (MQ=255) ccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATc > 1:3017490‑M2/12‑50 (MQ=255) cctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATcc < 1:1289520‑M2/40‑1 (MQ=255) ctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCg > 1:2343675‑M2/10‑50 (MQ=255) tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:3391896‑M2/9‑50 (MQ=255) tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:4857057‑M2/9‑50 (MQ=255) tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:314998‑M2/9‑50 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:4283915‑M2/8‑49 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGcc > 1:5643257‑M2/7‑49 (MQ=255) ggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCa > 1:5765436‑M2/6‑49 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 1:2139227‑M2/4‑49 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa < 1:5566202‑M2/48‑1 (MQ=255) agGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 1:2649683‑M2/3‑48 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaa > 1:5954864‑M2/2‑47 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAg < 1:1805574‑M2/49‑1 (MQ=255) gaaATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCaaaaa > 1:5006679/1‑48 (MQ=255) | AGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAG > NC_000913/2565440‑2565537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |