| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 50 [0] | [0] 49 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 45 (0.900) | 30/96 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15340‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTC > 1:2211895/1‑49AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTC > 1:1746587/1‑49AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAACACTC > 1:780940/1‑49 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:1953573/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCcc > 1:52573/1‑47 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCACCTCct > 1:1240364/1‑48 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAA < 1:3900528/50‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAA < 1:2379865/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:99072/50‑1 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:7367/50‑1 TGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATG > 1:1262740/1‑50 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCTTCCTCCATGT > 1:1006709/1‑50 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 1:2179943/49‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:3509947/50‑1 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:2707079/50‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCACCTCCATGTG > 1:3640134/1‑49 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:1390436/50‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:745226/50‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:2739631/50‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:1732126/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGGTCAACCTACCTCAAAGTGTA > 1:1436153/1‑50 ATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:897340/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:685296/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 1:1145161/50‑1 TGCGAGCACCTGTAAAGTGGCGGGGATTACACCACCTCAATGTGTATta > 1:139144/1‑47 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:1941870/49‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAA < 1:3057689/50‑1 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACA < 1:2205860/49‑1 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:1429566/50‑1 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:1629297/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 1:3243566/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 1:1199590/48‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:2996193/49‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:1373827/49‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:3145514/50‑1 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:1101201/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG > 1:3494708/1‑50 GGGGATCACTCTACCTCAATGTGTATCACATTATCCATATTCTTTGTGGG > 1:1354537/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:1708503/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:2453659/1‑50 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1112647/1‑48 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 1:2975548/50‑1 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:208463/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:745221/49‑1 CTCTACCTCAATGTGTATCACAATATCCATATTATTTGTGGGGGAGTCTG < 1:3770063/50‑1 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:35571/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:3502003/1‑49 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:798557/1‑49 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:1034914/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:1301412/1‑48 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15340‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |