| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 50 [0] | [0] 49 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 45 (0.900) | 30/96 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20516‑20611 | gggtgcgttgaagatatgcgagcacctgtaaagtggcggggatcactct < 1:1953573‑M2/1‑1 (MQ=255) cgttgaagatatgcgagcacctgtaaagtggcgggggtcactctacccc > 1:52573‑M2/44‑47 (MQ=255) gttgaagatatgcgagcacctgtaaagtggcgggggtcacccCACctcct > 1:1240364‑M2/43‑48 (MQ=255) gttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCaa < 1:3900528‑M2/8‑1 (MQ=255) gttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCaa < 1:2379865‑M2/8‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:99072‑M2/9‑1 (MQ=255) ttgaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAt < 1:7367‑M2/9‑1 (MQ=255) tgaagatatgcgagcacctgtaaagtggcgggggtcactcTACCTCAAtg > 1:1262740‑M2/41‑50 (MQ=255) gaagatatgcgagcacctgtaaagtggcgggggttactcTTCCTCCAtgt > 1:1006709‑M2/40‑50 (MQ=255) gaagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtg < 1:2179943‑M2/10‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgtg < 1:3509947‑M2/12‑1 (MQ=255) aagatatgcgagcacctgtaaagtggcggggatcactcTACCTCAAtgtg < 1:2707079‑M2/12‑1 (MQ=255) agatatgcgagcacctgtaaagtggcgggggtcactcCACCTCCAtgtg > 1:3640134‑M2/38‑49 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:745226‑M2/13‑1 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:2739631‑M2/13‑1 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:1732126‑M2/13‑1 (MQ=255) agatatgcgagcacctgtaaagtggcggggatcactcTACCTCAATgtgt < 1:1390436‑M2/13‑1 (MQ=255) gatatgcgagcacctgtaaagtggcgggggtcaaccTACCTCAAAGTGTa > 1:1436153‑M2/37‑50 (MQ=255) atatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTAt < 1:897340‑M2/15‑1 (MQ=255) tatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATc < 1:1145161‑M2/16‑1 (MQ=255) tatgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATc < 1:685296‑M2/16‑1 (MQ=255) tgcgagcacctgtaaagtggcggggattacacCACCTCAATGTGtatta > 1:139144‑M2/33‑47 (MQ=255) tgcgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATca < 1:1941870‑M2/17‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATcaca < 1:2205860‑M2/19‑1 (MQ=255) cgagcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACaa < 1:3057689‑M2/20‑1 (MQ=255) agcacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAata < 1:1429566‑M2/22‑1 (MQ=255) cacctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATc < 1:1629297‑M2/24‑1 (MQ=255) cctgtaaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCa < 1:3243566‑M2/26‑1 (MQ=255) taaagtggcggggatcactcTACCTCAATGTGTATCACAATATCCata < 1:1199590‑M2/28‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTc < 1:1373827‑M2/31‑1 (MQ=255) aagtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTc < 1:2996193‑M2/31‑1 (MQ=255) gtggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCttt < 1:3145514‑M2/34‑1 (MQ=255) ggcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgt > 1:1101201‑M2/15‑50 (MQ=255) gcggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTtgtg > 1:3494708‑M2/14‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACATTATCCATATTCTTTGTggg > 1:1354537‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:1708503‑M2/12‑50 (MQ=255) ggggatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTggg > 1:2453659‑M2/12‑50 (MQ=255) gatcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTgggg > 1:1112647‑M2/9‑48 (MQ=255) tcactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGt < 1:2975548‑M2/44‑1 (MQ=255) cactcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc > 1:208463‑M2/6‑50 (MQ=255) actcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTc < 1:745221‑M2/45‑1 (MQ=255) ctcTACCTCAATGTGTATCACAATATCCATATTATTTGTGGGGGAGTCTg < 1:3770063‑M2/47‑1 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:3502003‑M2/3‑49 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:35571‑M2/3‑49 (MQ=255) tcTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:798557‑M2/3‑49 (MQ=255) cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:1034914‑M2/2‑48 (MQ=255) cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:1301412‑M2/2‑48 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTgg < 1:2215096/48‑1 (MQ=255) tacctCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTg > 1:1043020/1‑47 (MQ=255) | CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTGG > NC_000913/20516‑20611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |