| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 50 [0] | [0] 49 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 45 (0.900) | 30/96 | 0.2 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15340‑15435 | aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTC > 1:2211895‑M1/1‑49 (MQ=255)aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTC > 1:1746587‑M1/1‑49 (MQ=255)aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAACACTC > 1:780940‑M1/1‑49 (MQ=255) gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCt < 1:1953573‑M1/49‑2 (MQ=255) cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacccc > 1:52573‑M1/1‑43 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCcacctcct > 1:1240364‑M1/1‑42 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaa < 1:3900528‑M1/50‑9 (MQ=255) gTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaa < 1:2379865‑M1/50‑9 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:99072‑M1/50‑10 (MQ=255) ttGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaat < 1:7367‑M1/50‑10 (MQ=255) tGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCtacctcaatg > 1:1262740‑M1/1‑40 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTACTCttcctccatgt > 1:1006709‑M1/1‑39 (MQ=255) gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatg < 1:2179943‑M1/49‑11 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:3509947‑M1/50‑13 (MQ=255) aaGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtg < 1:2707079‑M1/50‑13 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCcacctccatgtg > 1:3640134‑M1/1‑37 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 1:1390436‑M1/50‑14 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 1:745226‑M1/50‑14 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 1:2739631‑M1/50‑14 (MQ=255) aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgt < 1:1732126‑M1/50‑14 (MQ=255) gATATGCGAGCACCTGTAAAGTGGCGGGGGTCAACCtacctcaaagtgta > 1:1436153‑M1/1‑36 (MQ=255) atatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtat < 1:897340‑M1/50‑16 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:685296‑M1/50‑17 (MQ=255) tatGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatc < 1:1145161‑M1/50‑17 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATTACACcacctcaatgtgtatta > 1:139144‑M1/1‑32 (MQ=255) tGCGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatca < 1:1941870‑M1/49‑18 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaa < 1:3057689‑M1/50‑21 (MQ=255) cGAGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcaca < 1:2205860‑M1/49‑20 (MQ=255) aGCACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaata < 1:1429566‑M1/50‑23 (MQ=255) cACCTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatc < 1:1629297‑M1/50‑25 (MQ=255) ccTGTAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatcca < 1:3243566‑M1/50‑27 (MQ=255) tAAAGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccata < 1:1199590‑M1/48‑29 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattc < 1:2996193‑M1/49‑32 (MQ=255) aaGTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattc < 1:1373827‑M1/49‑32 (MQ=255) gTGGCGGGGATCACTCtacctcaatgtgtatcacaatatccatattcttt < 1:3145514‑M1/50‑35 (MQ=255) ggCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgt > 1:1101201‑M1/1‑14 (MQ=255) gCGGGGATCACTCtacctcaatgtgtatcacaatatccatattctttgtg > 1:3494708‑M1/1‑13 (MQ=255) ggggATCACTCtacctcaatgtgtatcacattatccatattctttgtggg > 1:1354537‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:1708503‑M1/1‑11 (MQ=255) ggggATCACTCtacctcaatgtgtatcacaatatccatattctttgtggg > 1:2453659‑M1/1‑11 (MQ=255) gATCACTCtacctcaatgtgtatcacaatatccatattctttgtgggg > 1:1112647‑M1/1‑8 (MQ=255) tCACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagt < 1:2975548‑M1/50‑45 (MQ=255) cACTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc > 1:208463‑M1/1‑5 (MQ=255) aCTCtacctcaatgtgtatcacaatatccatattctttgtgggggagtc < 1:745221‑M1/49‑46 (MQ=255) ctctacctcaatgtgtatcacaatatccatattatttgtgggggagtctg < 1:3770063‑M1/50‑48 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:35571‑M1/1‑2 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:3502003‑M1/1‑2 (MQ=255) tctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:798557‑M1/1‑2 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:1034914‑M1/1‑1 (MQ=255) ctacctcaatgtgtatcacaatatccatattctttgtgggggagtctg > 1:1301412‑M1/1‑1 (MQ=255) | AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT > NC_000913/15340‑15435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |