| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 58 [0] | [0] 56 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 56 (1.090) | 40/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 1:958063/1‑50 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 1:3645806/50‑1 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:2383960/1‑50 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:1948743/1‑49 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG < 1:2950888/50‑1 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG < 1:2574379/50‑1 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:160950/50‑1 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:767125/50‑1 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGA < 1:3447685/50‑1 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:2065347/1‑48 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG < 1:2251983/50‑1 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 1:2573455/50‑1 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 1:3792778/50‑1 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC > 1:1996274/1‑50 GCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC < 1:1129108/50‑1 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:1268915/1‑50 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:729123/1‑50 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT < 1:1440811/50‑1 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:3529418/1‑50 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:3384636/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:591982/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:1412067/1‑49 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA < 1:1606591/49‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA < 1:903717/49‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC < 1:3727679/50‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:697484/1‑50 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA < 1:3590554/49‑1 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:1980574/1‑49 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:1495895/1‑49 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA < 1:2462204/49‑1 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:2373173/1‑49 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:1725808/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:3879415/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:2967535/1‑50 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:3914265/1‑50 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:3880/1‑50 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:144386/1‑50 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:3643867/1‑50 GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT > 1:3592731/1‑50 GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT < 1:3030384/49‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT < 1:3153128/49‑1 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:380582/1‑49 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:2357385/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA < 1:1533288/50‑1 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:1160997/1‑47 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGA < 1:7896/50‑1 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:3164114/1‑48 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG < 1:2875749/50‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG < 1:571/50‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:2649556/1‑47 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:1429804/1‑46 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC < 1:2610849/50‑1 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC < 1:2272276/50‑1 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC < 1:2502005/50‑1 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC < 1:711449/50‑1 TTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 1:3915787/1‑49 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |