BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	819,776	Δ62,977 bp		ybhL–deoR	57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	819776	882752	62977	58 [0]	[0] 56	ybhL–deoR	ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 819775	NA (NA)	56 (1.090)	40/98	0.0	100%	noncoding (17/27 nt)	REPt74	REPt74
*	?	NC_000913	882753 =	0 (0.000)	56 (1.090)	40/98	0.0	100%	intergenic (‑19/+39)	deoR/ybjG	DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase

GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG  >  NC_000913/882704‑882800

caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt                                                 >  1:958063‑M2/50‑50 (MQ=255)

 aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt                                                <  1:3645806‑M2/2‑1 (MQ=255)

 aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt                                                >  1:2383960‑M2/49‑50 (MQ=255)

  ggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt                                                >  1:1948743‑M2/48‑49 (MQ=255)

     ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg                                            <  1:2950888‑M2/6‑1 (MQ=255)

     ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg                                            <  1:2574379‑M2/6‑1 (MQ=255)

      gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc                                           <  1:160950‑M2/7‑1 (MQ=255)

      gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc                                           <  1:767125‑M2/7‑1 (MQ=255)

        aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc                                           >  1:2065347‑M2/42‑48 (MQ=255)

        aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGa                                         <  1:3447685‑M2/9‑1 (MQ=255)

         aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg                                        <  1:2251983‑M2/10‑1 (MQ=255)

           acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc                                      <  1:2573455‑M2/12‑1 (MQ=255)

           acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc                                      <  1:3792778‑M2/12‑1 (MQ=255)

           acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc                                      >  1:1996274‑M2/39‑50 (MQ=255)

             gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc                                    <  1:1129108‑M2/14‑1 (MQ=255)

              ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt                                   >  1:1268915‑M2/36‑50 (MQ=255)

              ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt                                   >  1:729123‑M2/36‑50 (MQ=255)

              ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt                                   <  1:1440811‑M2/15‑1 (MQ=255)

              ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt                                   >  1:3529418‑M2/36‑50 (MQ=255)

               tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt                                   >  1:3384636‑M2/35‑49 (MQ=255)

               tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt                                   >  1:591982‑M2/35‑49 (MQ=255)

               tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt                                   >  1:1412067‑M2/35‑49 (MQ=255)

                 gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa                                 <  1:1606591‑M2/17‑1 (MQ=255)

                 gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa                                 <  1:903717‑M2/17‑1 (MQ=255)

                    gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac                             <  1:3727679‑M2/21‑1 (MQ=255)

                    gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac                             >  1:697484‑M2/30‑50 (MQ=255)

                    gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta                              <  1:3590554‑M2/20‑1 (MQ=255)

                     ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac                             >  1:1980574‑M2/29‑49 (MQ=255)

                     ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac                             >  1:1495895‑M2/29‑49 (MQ=255)

                       ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta                           <  1:2462204‑M2/23‑1 (MQ=255)

                       ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta                           >  1:2373173‑M2/27‑49 (MQ=255)

                        tttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca                         >  1:1725808‑M2/26‑50 (MQ=255)

                         ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac                        >  1:3879415‑M2/25‑50 (MQ=255)

                         ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac                        >  1:2967535‑M2/25‑50 (MQ=255)

                          tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt                       >  1:3914265‑M2/24‑50 (MQ=255)

                          tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt                       >  1:3880‑M2/24‑50 (MQ=255)

                          tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt                       >  1:144386‑M2/24‑50 (MQ=255)

                          tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt                       >  1:3643867‑M2/24‑50 (MQ=255)

                           gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt                      >  1:3592731‑M2/23‑50 (MQ=255)

                           gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt                       <  1:3030384‑M2/27‑1 (MQ=255)

                            ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt                      <  1:3153128‑M2/28‑1 (MQ=255)

                              agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt                    >  1:380582‑M2/20‑49 (MQ=255)

                                ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg                 <  1:2357385‑M2/33‑1 (MQ=255)

                                  ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa               <  1:1533288‑M2/35‑1 (MQ=255)

                                   gataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg                 >  1:1160997‑M2/15‑47 (MQ=255)

                                    ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga             <  1:7896‑M2/37‑1 (MQ=255)

                                    ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa               >  1:3164114‑M2/14‑48 (MQ=255)

                                     taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag            <  1:2875749‑M2/38‑1 (MQ=255)

                                     taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag            <  1:571‑M2/38‑1 (MQ=255)

                                     taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa               >  1:2649556‑M2/13‑47 (MQ=255)

                                      aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa               >  1:1429804‑M2/12‑46 (MQ=255)

                                            ccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTc     <  1:2610849‑M2/45‑1 (MQ=255)

                                            ccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTc     <  1:2272276‑M2/45‑1 (MQ=255)

                                              gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc   <  1:2502005‑M2/47‑1 (MQ=255)

                                              gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc   <  1:711449‑M2/47‑1 (MQ=255)

                                                tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg  >  1:3915787‑M2/2‑49 (MQ=255)

GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG  >  NC_000913/882704‑882800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`