| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 58 [0] | [0] 56 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 56 (1.090) | 40/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
GCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819726‑819823 | gcagGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCt < 1:648104/50‑1 (MQ=255)gcagGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCt > 1:2409260/1‑50 (MQ=255) cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt > 1:958063‑M1/1‑49 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt < 1:3645806‑M1/50‑3 (MQ=255) aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt > 1:2383960‑M1/1‑48 (MQ=255) ggcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt > 1:1948743‑M1/1‑47 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 1:2950888‑M1/50‑7 (MQ=255) ggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaag < 1:2574379‑M1/50‑7 (MQ=255) gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc < 1:160950‑M1/50‑8 (MQ=255) gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc < 1:767125‑M1/50‑8 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcga < 1:3447685‑M1/50‑10 (MQ=255) aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc > 1:2065347‑M1/1‑41 (MQ=255) aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag < 1:2251983‑M1/50‑11 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:3792778‑M1/50‑13 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc < 1:2573455‑M1/50‑13 (MQ=255) aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc > 1:1996274‑M1/1‑38 (MQ=255) gCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgc < 1:1129108‑M1/50‑15 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:1268915‑M1/1‑35 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:729123‑M1/1‑35 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct < 1:1440811‑M1/50‑16 (MQ=255) cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:3529418‑M1/1‑35 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:591982‑M1/1‑34 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:3384636‑M1/1‑34 (MQ=255) tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct > 1:1412067‑M1/1‑34 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctca < 1:903717‑M1/49‑18 (MQ=255) gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctca < 1:1606591‑M1/49‑18 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac < 1:3727679‑M1/50‑22 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac > 1:697484‑M1/1‑29 (MQ=255) gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata < 1:3590554‑M1/49‑21 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac > 1:1495895‑M1/1‑28 (MQ=255) ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac > 1:1980574‑M1/1‑28 (MQ=255) ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta < 1:2462204‑M1/49‑24 (MQ=255) ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta > 1:2373173‑M1/1‑26 (MQ=255) tttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactaca > 1:1725808‑M1/1‑25 (MQ=255) ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac > 1:2967535‑M1/1‑24 (MQ=255) ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac > 1:3879415‑M1/1‑24 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact > 1:144386‑M1/1‑23 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact > 1:3643867‑M1/1‑23 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact > 1:3880‑M1/1‑23 (MQ=255) tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact > 1:3914265‑M1/1‑23 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt > 1:3592731‑M1/1‑22 (MQ=255) gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact < 1:3030384‑M1/49‑28 (MQ=255) ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactt < 1:3153128‑M1/49‑29 (MQ=255) aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt > 1:380582‑M1/1‑19 (MQ=255) ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag < 1:2357385‑M1/50‑34 (MQ=255) ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca < 1:1533288‑M1/50‑36 (MQ=255) gATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag > 1:1160997‑M1/1‑14 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcaga < 1:7896‑M1/50‑38 (MQ=255) aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:3164114‑M1/1‑13 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcagag < 1:571‑M1/50‑39 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcagag < 1:2875749‑M1/50‑39 (MQ=255) tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:2649556‑M1/1‑12 (MQ=255) aaGGCACCGCTttgaagcgagccgctcaatactacactttttagca > 1:1429804‑M1/1‑11 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:2610849‑M1/50‑46 (MQ=255) ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc < 1:2272276‑M1/50‑46 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac < 1:711449‑M1/50‑48 (MQ=255) gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac < 1:2502005‑M1/50‑48 (MQ=255) tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg > 1:3915787‑M1/1‑1 (MQ=255) | GCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT > NC_000913/819726‑819823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |