| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 167,484 | Δ5,964 bp | [fhuA]–fhuB | [fhuA], fhuC, fhuD, fhuB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 167484 | 173447 | 5964 | 64 [0] | [0] 64 | [fhuA]–fhuB | [fhuA],fhuC,fhuD,fhuB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 167483 | 0 (0.000) | 64 (1.250) | 45/98 | 0.0 | 100% | intergenic (+219/‑1) | mrcB/fhuA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | 173448 = | 0 (0.000) | intergenic (+4/+154) | fhuB/hemL | iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase | |||||
AATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATCG > NC_000913/167436‑167532 | aaTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt > 1:1886620‑M1/1‑48 (MQ=255) aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc > 1:3215566‑M1/1‑47 (MQ=255) aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc > 1:286952‑M1/1‑47 (MQ=255) aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt < 1:2882949‑M1/49‑3 (MQ=255) tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcc < 1:945832‑M1/50‑5 (MQ=255) cATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca > 1:3252916‑M1/1‑45 (MQ=255) aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccat < 1:3022732‑M1/50‑7 (MQ=255) aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccat < 1:1741252‑M1/50‑7 (MQ=255) aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca > 1:1183108‑M1/1‑44 (MQ=255) aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca > 1:3714962‑M1/1‑44 (MQ=255) ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata < 1:3808919‑M1/50‑8 (MQ=255) tctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata > 1:1671240‑M1/1‑42 (MQ=255) tctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata > 1:1829548‑M1/1‑42 (MQ=255) tctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata > 1:1077604‑M1/1‑42 (MQ=255) tctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata > 1:79758‑M1/1‑42 (MQ=255) cGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac > 1:534355‑M1/1‑39 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacg > 1:475410‑M1/1‑38 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacg > 1:1128352‑M1/1‑38 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacg > 1:3054250‑M1/1‑38 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac < 1:1876185‑M1/49‑12 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac < 1:3344349‑M1/49‑12 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataa < 1:2673693‑M1/48‑11 (MQ=255) gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata < 1:1140108‑M1/47‑10 (MQ=255) tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg < 1:1618163‑M1/50‑14 (MQ=255) ttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggc > 1:1491876‑M1/1‑36 (MQ=255) ttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggc > 1:2394462‑M1/1‑36 (MQ=255) gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg > 1:774440‑M1/1‑32 (MQ=255) gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg > 1:3948232‑M1/1‑32 (MQ=255) ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgt < 1:3015332‑M1/50‑20 (MQ=255) ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgt < 1:287236‑M1/50‑20 (MQ=255) tATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta > 1:466084‑M1/1‑30 (MQ=255) aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta < 1:2601374‑M1/49‑21 (MQ=255) aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta < 1:855508‑M1/49‑21 (MQ=255) tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac < 1:2820800‑M1/49‑22 (MQ=255) tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac < 1:1163000‑M1/49‑22 (MQ=255) cATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc > 1:1482842‑M1/1‑27 (MQ=255) aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc < 1:3129294‑M1/50‑25 (MQ=255) aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc < 1:2187262‑M1/49‑24 (MQ=255) ttCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcct < 1:3091542‑M1/50‑26 (MQ=255) aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga > 1:3833322‑M1/1‑22 (MQ=255) cTTTACATCAGAGATATACCAttccatataacggccctgtacgcctggac > 1:3277865‑M1/1‑21 (MQ=255) tACATCAGAGATATACCAttccatataacggccctgtacgcctggacgga > 1:3688788‑M1/1‑18 (MQ=255) tACATCAGAGATATACCAttccatataacggccctgtacgcctggacgga > 1:367625‑M1/1‑18 (MQ=255) aCATCAGAGATATACCAttccatataacggccctgtacgcctggacgga < 1:209944‑M1/49‑33 (MQ=255) cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat < 1:486110‑M1/49‑34 (MQ=255) aTCAGAGATATACCAttccatataacggccctgtacgcctggacggataa < 1:3631194‑M1/50‑36 (MQ=255) tCAGAGATATACCAttccatataacggccctgtacgcctggacggataaa < 1:2132317‑M1/50‑37 (MQ=255) tCAGAGATATACCAttccatataacggccctgtacgcctggacggata > 1:2479453‑M1/1‑14 (MQ=255) cAGAGATATACCAttccatataacggccctgtacgcctggacggataaag > 1:2075094‑M1/1‑13 (MQ=255) agagATATACCAttccatataacggccctgtacgcctggacggataaagc < 1:209109‑M1/50‑39 (MQ=255) agagATATACCAttccatataacggccctgtacgcctggacggataaagc > 1:3501566‑M1/1‑12 (MQ=255) agagATATACCAttccatataacggccctgtacgcctggacggataaagc > 1:1489163‑M1/1‑12 (MQ=255) agagATATACCAttccatataacggccctgtacgcctggacggataaag < 1:891859‑M1/49‑38 (MQ=255) gaTATACCAttccatataacggccctgtacgcctggacggataaagcgtt > 1:2162361‑M1/1‑9 (MQ=255) tataCCAttccatataacggccctgtacgcctggacggataaagcgttta < 1:2024857‑M1/50‑44 (MQ=255) tataCCAttccatataacggccctgtacgcctggacggataaagcgttta < 1:1460072‑M1/50‑44 (MQ=255) ataCCAttccatataacggccctgtacgcctggacggataaagcgtttac > 1:1397453‑M1/1‑6 (MQ=255) taCCAttccatataacggccctgtacgcctggacggataaagcgtttac < 1:1197866‑M1/49‑45 (MQ=255) ccAttccatataacggccctgtacgcctggacggataaagcgtttacgcg < 1:3606573‑M1/50‑48 (MQ=255) ccAttccatataacggccctgtacgcctggacggataaagcgtttacgcg < 1:1137311‑M1/50‑48 (MQ=255) cAttccatataacggccctgtacgcctggacggataaagcgtttacgcga < 1:467731‑M1/50‑49 (MQ=255) attccatataacggccctgtacgcctggacggataaagcgtttacgcgac < 1:258886‑M1/50‑50 (MQ=255) attccatataacggccctgtacgcctggacggataaagcgtttacgcga > 1:3777316‑M1/1‑1 (MQ=255) attccatataacggccctgtacgcctggacggataaagcgtttacgcga > 1:2431989‑M1/1‑1 (MQ=255) | AATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATCG > NC_000913/167436‑167532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |