| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 49 [0] | [0] 50 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 46 (0.850) | 32/92 | 0.1 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846250‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > NC_000913/2867269‑2867316 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCG < 1:1730136/50‑1AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 1:2980721/49‑1AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 1:453888/49‑1AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:994580/1‑49 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT < 1:136490/50‑1 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT < 1:2860910/50‑1 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATC < 1:644540/50‑1 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:1571418/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:469248/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:4322788/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC < 1:4019482/50‑1 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:4363897/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC < 1:2467191/50‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:4141713/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 1:4145608/49‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:837837/1‑50 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG < 1:1343555/49‑1 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC < 1:2853079/50‑1 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC < 1:2378732/50‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 1:1098924/1‑50 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGAC < 1:1746472/49‑1 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 1:4258575/1‑50 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 1:1258381/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:3519213/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:1617803/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:390897/1‑49 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGCGAGGCGACATCTCCA > 1:1495311/1‑50 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:553911/1‑50 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:285263/1‑50 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 1:3032608/50‑1 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1116271/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1668935/1‑49 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCA < 1:676562/50‑1 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:51264/1‑50 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:4328388/1‑50 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG < 1:2310368/49‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG > 1:2947254/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG < 1:4229789/50‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > 1:4248767/1‑50 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:1461133/1‑50 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:4314574/1‑50 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA > 1:2310584/1‑50 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA > 1:2153554/1‑50 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA > 1:693631/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:2257614/50‑1 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG < 1:3128178/50‑1 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC < 1:2174041/50‑1 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:2630259/1‑50 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG > 1:2137736/1‑50 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG < 1:357861/50‑1 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA < 1:3661409/50‑1 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > 1:2620545/1‑49 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > 1:2026227/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846250‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > NC_000913/2867269‑2867316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |