| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 49 [0] | [0] 50 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 46 (0.850) | 32/92 | 0.1 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAG > NC_000913/2846252‑2846348 | cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt < 1:136490‑M1/50‑2 (MQ=255)cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAt < 1:2860910‑M1/50‑2 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 1:644540‑M1/50‑3 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:469248‑M1/1‑46 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:4322788‑M1/1‑46 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:1571418‑M1/1‑46 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:4363897‑M1/1‑45 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc < 1:4019482‑M1/50‑6 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc < 1:2467191‑M1/50‑6 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 1:4141713‑M1/1‑42 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg < 1:4145608‑M1/49‑8 (MQ=255) tGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggc > 1:837837‑M1/1‑41 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg < 1:1343555‑M1/49‑11 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc < 1:2853079‑M1/50‑13 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc < 1:2378732‑M1/50‑13 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 1:1098924‑M1/1‑32 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgac < 1:1746472‑M1/49‑23 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat > 1:1258381‑M1/1‑26 (MQ=255) cGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat > 1:4258575‑M1/1‑26 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:3519213‑M1/1‑25 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:1617803‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:390897‑M1/1‑22 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgcgaggcgacatctcca > 1:1495311‑M1/1‑21 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:553911‑M1/1‑21 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:285263‑M1/1‑21 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:3032608‑M1/50‑31 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:1116271‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:1668935‑M1/1‑18 (MQ=255) ttACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgca < 1:676562‑M1/50‑34 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:4328388‑M1/1‑16 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag > 1:51264‑M1/1‑16 (MQ=255) aCCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcag < 1:2310368‑M1/49‑35 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg > 1:2947254‑M1/1‑14 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtg < 1:4229789‑M1/50‑37 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc > 1:4248767‑M1/1‑13 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:1461133‑M1/1‑11 (MQ=255) aaCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:4314574‑M1/1‑11 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 1:2153554‑M1/1‑9 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 1:693631‑M1/1‑9 (MQ=255) cAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 1:2310584‑M1/1‑9 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 1:2257614‑M1/50‑43 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg < 1:3128178‑M1/50‑44 (MQ=255) cACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc > 1:2630259‑M1/1‑6 (MQ=255) cACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgc < 1:2174041‑M1/50‑45 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg < 1:357861‑M1/50‑46 (MQ=255) aCCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcg > 1:2137736‑M1/1‑5 (MQ=255) gAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa < 1:3661409‑M1/50‑49 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 1:2620545‑M1/1‑1 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa > 1:2026227‑M1/1‑1 (MQ=255) | CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAG > NC_000913/2846252‑2846348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |