| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 49 [0] | [0] 50 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 46 (0.850) | 32/92 | 0.1 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat < 1:2860910‑M2/1‑1 (MQ=255)cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat < 1:136490‑M2/1‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatc < 1:644540‑M2/2‑1 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:1571418‑M2/47‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:469248‑M2/47‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:4322788‑M2/47‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc < 1:4019482‑M2/5‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc < 1:2467191‑M2/5‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:4363897‑M2/46‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 1:4141713‑M2/43‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg < 1:4145608‑M2/7‑1 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc > 1:837837‑M2/42‑50 (MQ=255) accattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg < 1:1343555‑M2/10‑1 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc < 1:2853079‑M2/12‑1 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc < 1:2378732‑M2/12‑1 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAgg > 1:1098924‑M2/33‑50 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGAc < 1:1746472‑M2/22‑1 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 1:4258575‑M2/27‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 1:1258381‑M2/27‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:3519213‑M2/26‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:1617803‑M2/23‑49 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:390897‑M2/23‑49 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGCGAGGCGACATCTCCa > 1:1495311‑M2/22‑50 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 1:553911‑M2/22‑50 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 1:285263‑M2/22‑50 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc < 1:3032608‑M2/30‑1 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:1116271‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:1668935‑M2/19‑49 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCa < 1:676562‑M2/33‑1 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:51264‑M2/17‑50 (MQ=255) taccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg > 1:4328388‑M2/17‑50 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg < 1:2310368‑M2/34‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg > 1:2947254‑M2/15‑50 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg < 1:4229789‑M2/36‑1 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 1:4248767‑M2/14‑50 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:1461133‑M2/12‑50 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:4314574‑M2/12‑50 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 1:2310584‑M2/10‑50 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 1:2153554‑M2/10‑50 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 1:693631‑M2/10‑50 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc < 1:2257614‑M2/42‑1 (MQ=255) gcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg < 1:3128178‑M2/43‑1 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc < 1:2174041‑M2/44‑1 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:2630259‑M2/7‑50 (MQ=255) accgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg > 1:2137736‑M2/6‑50 (MQ=255) accgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg < 1:357861‑M2/45‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa < 1:3661409‑M2/48‑1 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa > 1:2620545‑M2/2‑49 (MQ=255) aTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa > 1:2026227‑M2/2‑49 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa < 1:3590770/50‑1 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |