Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 59 [0] | [0] 57 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1388888 | 0 (0.000) | 57 (1.000) | 42/96 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR |
ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAAGATGAG > NC_000913/1388840‑1388934 | aCGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:2869646‑M1/1‑49 (MQ=255) aCGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT < 1:2901851‑M1/49‑1 (MQ=255) aCGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT < 1:2728968‑M1/49‑1 (MQ=255) gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTaca < 1:2859750‑M1/50‑4 (MQ=255) gTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:3193859‑M1/1‑47 (MQ=255) acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacaggg > 1:2789248‑M1/1‑44 (MQ=255) acacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacaggg > 1:182584‑M1/1‑44 (MQ=255) cacCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggt > 1:2242356‑M1/1‑43 (MQ=255) acCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtc > 1:4275434‑M1/1‑42 (MQ=255) ccTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtct < 1:3918666‑M1/50‑10 (MQ=255) ccTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtct < 1:2512489‑M1/50‑10 (MQ=255) cTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctc > 1:1098326‑M1/1‑40 (MQ=255) cTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctc > 1:2180177‑M1/1‑40 (MQ=255) tttATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctta < 1:3289131‑M1/50‑15 (MQ=255) tttATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctta > 1:2662415‑M1/1‑36 (MQ=255) ttATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctcctta > 1:3844617‑M1/1‑35 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttac > 1:3578343‑M1/1‑34 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttac > 1:4449248‑M1/1‑34 (MQ=255) aTGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaa > 1:855084‑M1/1‑33 (MQ=255) aTGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttaca < 1:2340893‑M1/49‑17 (MQ=255) aTGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttaca < 1:2714951‑M1/49‑17 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaa < 1:3305845‑M1/49‑18 (MQ=255) cTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaa < 1:2057778‑M1/50‑21 (MQ=255) cTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaa > 1:3951119‑M1/1‑30 (MQ=255) cTAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaa > 1:4363798‑M1/1‑30 (MQ=255) tAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac > 1:4806‑M1/1‑29 (MQ=255) tAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac > 1:2203100‑M1/1‑29 (MQ=255) tAACTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac > 1:226748‑M1/1‑29 (MQ=255) aaCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact > 1:3313521‑M1/1‑28 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactg < 1:4132069‑M1/50‑24 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactg > 1:908932‑M1/1‑27 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaact < 1:1278531‑M1/49‑23 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaac < 1:1265455‑M1/48‑22 (MQ=255) cTGTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgt < 1:2811197‑M1/50‑25 (MQ=255) gTCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgtc > 1:2852291‑M1/1‑24 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaa < 1:3172346‑M1/50‑28 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg > 1:2370557‑M1/1‑21 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaac < 1:4443641‑M1/49‑29 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaac < 1:1938519‑M1/49‑29 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaac < 1:353553‑M1/49‑29 (MQ=255) aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgc < 1:208738‑M1/50‑31 (MQ=255) aTAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgc < 1:3506727‑M1/50‑31 (MQ=255) tAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacgca < 1:3243863‑M1/50‑32 (MQ=255) tAACACAGCAAACGCTATTacagggtctccttacaacaactgtcaacg > 1:966802‑M1/1‑19 (MQ=255) acacAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcag < 1:3879058‑M1/49‑33 (MQ=255) acacAGCAAACGCTATTacagggtctccttacaacaactgtcaacgcag < 1:87847‑M1/49‑33 (MQ=255) cacaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtt > 1:528037‑M1/1‑16 (MQ=255) cacaGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtt > 1:1207144‑M1/1‑16 (MQ=255) caGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttg > 1:752977‑M1/1‑14 (MQ=255) caGCAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttg < 1:1222516‑M1/50‑37 (MQ=255) cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa < 1:4008532‑M1/50‑40 (MQ=255) cAAACGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaa > 1:1527488‑M1/1‑11 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat < 1:1889487‑M1/50‑41 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat < 1:680381‑M1/50‑41 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtcaacgcagtttgtaat > 1:1280058‑M1/1‑10 (MQ=255) gCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaaa < 1:199315‑M1/50‑45 (MQ=255) gCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaaa < 1:140648‑M1/50‑45 (MQ=255) gCTATTacagggtctccttacaacaactgtcaacgcagtttgtaattaa > 1:2997577‑M1/1‑6 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagtttgtaattaaaag < 1:1887167‑M1/48‑47 (MQ=255) | ACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAAGATGAG > NC_000913/1388840‑1388934 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |