| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 117 [0] | [0] 108 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 108 (0.950) | 64/98 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
Only 100 of 108 total aligned reads displayed.
GCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508824‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 GCGTTGATGCCAAATGCGCCACCCTAAAGCAGTGCATCCGTAATGATGTG > 1:4206123/1‑50 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG < 1:1437760/50‑1 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG < 1:8113634/50‑1 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG < 1:8611695/49‑1 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG < 1:6930386/49‑1 GTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG > 1:7281708/1‑49 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA > 1:2486109/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG > 1:1761198/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAAC < 1:2173464/49‑1 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC > 1:1105168/1‑50 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC < 1:417944/50‑1 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC < 1:5539330/50‑1 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC < 1:59066/50‑1 CCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCA < 1:5826241/50‑1 CCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGC > 1:2984654/1‑49 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA > 1:3299999/1‑50 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA < 1:8214452/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATG < 1:2597766/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT > 1:7448089/1‑49 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT > 1:406451/1‑49 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT > 1:1099636/1‑49 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA < 1:7814036/50‑1 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA < 1:7397012/50‑1 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA > 1:2806343/1‑50 GCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC > 1:2544774/1‑49 GCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC > 1:2841934/1‑49 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA > 1:3644001/1‑50 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA < 1:5798218/50‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA < 1:4863460/50‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACG < 1:5652242/49‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACG < 1:8429059/49‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:6881276/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:3264756/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:4833368/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT > 1:8529404/1‑49 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT > 1:2779112/1‑49 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA > 1:3004314/1‑50 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT < 1:5355225/50‑1 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC < 1:3287305/50‑1 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:6298385/1‑50 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:7787504/1‑50 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:6544619/1‑50 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCC < 1:2649412/50‑1 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:7986856/1‑49 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA < 1:6173884/50‑1 AAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC > 1:7734596/1‑50 AAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC > 1:1332802/1‑50 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCC > 1:8515441/1‑50 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC < 1:1882572/49‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC < 1:4625659/49‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT < 1:2284479/48‑1 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT < 1:3396907/50‑1 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT < 1:502709/50‑1 GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC > 1:618545/1‑50 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT > 1:4479/1‑50 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:4971490/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:1065395/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT > 1:1355684/1‑50 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:3496873/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:3499898/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:3915945/50‑1 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG > 1:7021683/1‑50 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG < 1:1423384/50‑1 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG > 1:3668071/1‑50 CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT > 1:2122711/1‑50 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 1:856318/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 1:7852460/50‑1 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG < 1:4164190/50‑1 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG < 1:1867972/50‑1 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:2127288/1‑50 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:8243463/1‑50 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:5391001/1‑50 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:51983/1‑50 ATCCGCAATGATGTGGAACGCGCAATGACAATCATCCATCCTCTGCTTGC > 1:5011378/1‑50 TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCC < 1:3860538/50‑1 TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCC < 1:2184431/50‑1 CCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:6594950/1‑48 CGCAATGATGTGGAACGCGCAATGACGATCATCCGTCCTCTGCTTGCCA < 1:7140022/49‑1 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG < 1:4084066/50‑1 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG < 1:204077/50‑1 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:7358231/1‑50 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCA < 1:3136789/49‑1 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:1052988/1‑49 CAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTA < 1:3044611/50‑1 AATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:489995/1‑50 ATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGT < 1:4962705/50‑1 ATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:2066674/1‑49 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:8107242/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:6512018/50‑1 GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG > 1:1719584/1‑50 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGC > 1:4532464/1‑50 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG < 1:4972341/49‑1 TGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > 1:2134034/1‑50 TGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > 1:3191741/1‑50 TGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG < 1:3822017/50‑1 GTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > 1:2064670/1‑49 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > 1:5484900/1‑50 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > 1:5260381/1‑50 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGC < 1:3201644/49‑1 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGC < 1:4520432/49‑1 GCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508824‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |