| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 117 [0] | [0] 108 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 108 (0.950) | 64/98 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
Only 100 of 108 total aligned reads displayed.
CTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549568‑549665 | gcgttgatgccaaatgcgccaccctaaagcagtgcatccgtaatgatgtg > 1:4206123‑M2/50‑50 (MQ=255) cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg < 1:1437760‑M2/2‑1 (MQ=255) cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg < 1:8113634‑M2/2‑1 (MQ=255) cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg < 1:8611695‑M2/1‑1 (MQ=255) cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg < 1:6930386‑M2/1‑1 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg > 1:7281708‑M2/48‑49 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa > 1:2486109‑M2/47‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg > 1:1761198‑M2/45‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc < 1:2173464‑M2/5‑1 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc > 1:1105168‑M2/44‑50 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc < 1:417944‑M2/7‑1 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc < 1:5539330‑M2/7‑1 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc < 1:59066‑M2/7‑1 (MQ=255) ccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACgcgc > 1:2984654‑M2/41‑49 (MQ=255) ccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCa < 1:5826241‑M2/10‑1 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa > 1:3299999‑M2/40‑50 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa < 1:8214452‑M2/11‑1 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:7448089‑M2/38‑49 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:1099636‑M2/38‑49 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:406451‑M2/38‑49 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATg < 1:2597766‑M2/13‑1 (MQ=255) atgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGa < 1:7814036‑M2/14‑1 (MQ=255) atgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGa < 1:7397012‑M2/14‑1 (MQ=255) atgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGa > 1:2806343‑M2/37‑50 (MQ=255) gcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGAc > 1:2544774‑M2/35‑49 (MQ=255) gcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGAc > 1:2841934‑M2/35‑49 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACg < 1:5652242‑M2/16‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACg < 1:8429059‑M2/16‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa > 1:3644001‑M2/34‑50 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa < 1:5798218‑M2/17‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa < 1:4863460‑M2/17‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:6881276‑M2/19‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:3264756‑M2/19‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:4833368‑M2/19‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat > 1:2779112‑M2/32‑49 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat > 1:8529404‑M2/32‑49 (MQ=255) caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatca > 1:3004314‑M2/31‑50 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat < 1:5355225‑M2/21‑1 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc < 1:3287305‑M2/22‑1 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:6298385‑M2/29‑50 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:7787504‑M2/29‑50 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:6544619‑M2/29‑50 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:7986856‑M2/28‑49 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcc < 1:2649412‑M2/23‑1 (MQ=255) ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca < 1:6173884‑M2/24‑1 (MQ=255) aaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc > 1:1332802‑M2/25‑50 (MQ=255) aaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc > 1:7734596‑M2/25‑50 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc < 1:1882572‑M2/26‑1 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc < 1:4625659‑M2/26‑1 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat < 1:2284479‑M2/25‑1 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCatccatcc > 1:8515441‑M2/24‑50 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct < 1:3396907‑M2/28‑1 (MQ=255) agcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCct < 1:502709‑M2/28‑1 (MQ=255) gcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctc > 1:618545‑M2/22‑50 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct > 1:4479‑M2/21‑50 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:4971490‑M2/30‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:1065395‑M2/30‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct > 1:1355684‑M2/21‑50 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:3496873‑M2/30‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:3499898‑M2/30‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:3915945‑M2/30‑1 (MQ=255) agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg > 1:7021683‑M2/20‑50 (MQ=255) agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg < 1:1423384‑M2/31‑1 (MQ=255) agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg > 1:3668071‑M2/20‑50 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:2122711‑M2/18‑50 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt < 1:856318‑M2/34‑1 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt < 1:7852460‑M2/34‑1 (MQ=255) catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg < 1:4164190‑M2/35‑1 (MQ=255) catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg < 1:1867972‑M2/35‑1 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:2127288‑M2/15‑50 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:8243463‑M2/15‑50 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:5391001‑M2/15‑50 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:51983‑M2/15‑50 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACAATCATCCATCCTCTGCTTGc > 1:5011378‑M2/15‑50 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGcc < 1:3860538‑M2/37‑1 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGcc < 1:2184431‑M2/37‑1 (MQ=255) ccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:6594950‑M2/13‑48 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCGTCCTCTGCTTGCCa < 1:7140022‑M2/38‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag < 1:4084066‑M2/39‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag < 1:204077‑M2/39‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:7358231‑M2/12‑50 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCa < 1:3136789‑M2/38‑1 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:1052988‑M2/11‑49 (MQ=255) caatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagta < 1:3044611‑M2/41‑1 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:489995‑M2/9‑50 (MQ=255) atgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtagt < 1:4962705‑M2/43‑1 (MQ=255) atgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:2066674‑M2/8‑49 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta < 1:8107242‑M2/44‑1 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAgtagta < 1:6512018‑M2/44‑1 (MQ=255) gatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag > 1:1719584‑M2/6‑50 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag < 1:4972341‑M2/45‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc > 1:4532464‑M2/5‑50 (MQ=255) tgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg > 1:2134034‑M2/4‑50 (MQ=255) tgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg > 1:3191741‑M2/4‑50 (MQ=255) tgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg < 1:3822017‑M2/47‑1 (MQ=255) gtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg > 1:2064670‑M2/3‑49 (MQ=255) tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcgc < 1:3201644‑M2/48‑1 (MQ=255) tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcgc < 1:4520432‑M2/48‑1 (MQ=255) tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa > 1:5484900‑M2/2‑50 (MQ=255) tGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa > 1:5260381‑M2/2‑50 (MQ=255) | CTTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549568‑549665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |