| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 108 [0] | [0] 110 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 107 (0.940) | 66/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
Only 100 of 107 total aligned reads displayed.
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > NC_000913/1140988‑1141036 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT > 1:1245464/1‑50AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT > 1:3862873/1‑50 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT < 1:5193944/50‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT > 1:4520022/1‑50 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT < 1:861532/49‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT < 1:4267394/49‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:8179349/50‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:4022824/50‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:6533225/50‑1 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG < 1:6389338/50‑1 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG < 1:7737072/50‑1 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG > 1:3335521/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:1002009/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTTTTCGCTT > 1:663970/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:4420616/1‑50 TTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:3583186/1‑49 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT < 1:1790350/49‑1 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT > 1:5317428/1‑49 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT < 1:266207/49‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAA < 1:7649722/50‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:6128897/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:7070453/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA < 1:2982075/49‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTACAGTGTTCGCTTTAAA < 1:3850228/50‑1 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 1:362597/1‑49 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:4734652/1‑50 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT < 1:7769436/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:2397837/1‑49 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:4980910/1‑49 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:3501221/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:293000/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:397721/1‑50 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 1:259809/50‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:3241224/1‑49 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:5562818/1‑49 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:405089/1‑49 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA > 1:4921473/1‑50 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA < 1:8315177/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:2170046/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:5315819/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:7049221/1‑49 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:6106726/1‑49 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAA < 1:1566996/50‑1 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAA < 1:1149836/50‑1 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA > 1:6849426/1‑49 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA > 1:5886541/1‑49 GTAACAATGCATTCCGGCCTGCAGTTTTCTCTTTAAAACATATCATGAAA > 1:827073/1‑50 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC > 1:2079622/1‑50 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC < 1:6646821/50‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 1:7711363/49‑1 AACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACT > 1:2845360/1‑50 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG < 1:5396152/50‑1 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACT < 1:6268625/49‑1 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG < 1:6491460/50‑1 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG < 1:2675025/50‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:4685977/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:2957321/1‑50 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:1047851/1‑49 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:2014599/1‑49 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA < 1:5567655/50‑1 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA < 1:1468565/50‑1 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA < 1:8432771/50‑1 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA < 1:3960172/50‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG < 1:266952/50‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG < 1:7026512/50‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 1:8294478/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 1:6523399/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTAT < 1:6555673/49‑1 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT < 1:7163415/50‑1 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT < 1:1446490/50‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT > 1:4534621/1‑50 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT < 1:4914619/50‑1 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT > 1:6190411/1‑50 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT < 1:2572595/49‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTG > 1:8305754/1‑50 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTG > 1:474589/1‑50 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT < 1:4431216/49‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT < 1:6046926/49‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT < 1:5748349/49‑1 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT > 1:1426441/1‑50 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT < 1:1222591/50‑1 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:3341668/1‑50 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:6833253/1‑50 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:6856580/1‑50 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:8496840/1‑50 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG < 1:1333379/50‑1 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG < 1:8078115/50‑1 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG < 1:3228620/50‑1 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG < 1:7075922/50‑1 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 1:3255614/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:6319262/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT > 1:6164129/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC < 1:2660826/49‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC < 1:397846/49‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC < 1:622008/48‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > 1:4136000/1‑50 GTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > 1:4795924/1‑50 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT < 1:220240/50‑1 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > 1:4677196/1‑50 GTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > 1:7590872/1‑50 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > NC_000913/1140988‑1141036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |